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Protein Overview: SNX1_ARATH

General Information:
Name(s) found: SNX1_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Sorting nexin 1 OS=Arabidopsis thaliana GN=SNX1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 402 amino acids

    Gene Ontology:
    Cellular Component: endosome [IDA]
    retromer complex [IDA][ISS]
    membrane [IDA]
    microsome [IDA]
    multivesicular body [IDA]
    Biological Process: root development [IMP]
    positive gravitropism [IMP]
    intracellular signaling pathway [ISS]
    auxin homeostasis [IDA]
    endosome to lysosome transport [ISS][TAS]
    protein targeting to vacuole [IMP]
    Golgi to vacuole transport [IDA]
    Molecular Function: protein binding [IEA]
    phosphoinositide binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP  60
   61 EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR FSAEFIEMRR AALDIFVNRI 120
  121 ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK 180
  181 PVEETTADYE KLKHYIFELE NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE 240
  241 PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC 300
  301 ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ 360
  361 EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY SV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..153] PSI-BLAST 20.30103 Solution structure of PX domain from human SNX12
    2 View Details [154..402] PSI-BLAST 16.522879 No description for 2ficA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle