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Protein Overview: gi|15242645, gi|...

General Information:
Name(s) found: gi|15242645 [NCBI NR]
gi|10178140 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|15242645|ref|NP_198847.1| exonuclease family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10178140|dbj|BAB11585.1| exonuclease-like protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 348 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA][ISS]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA]
    zinc ion binding [IEA]
    exonuclease activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTCRNKCGG CYRQFNKKEH LVEHMRISYH SVHEPTCGIC NKHCRSFDSL REHLIGPLPK  60
   61 QECKNIFSIR GCRFCLTILE SPNARRIHQE RCQLSNVTSG LMIRMAALGL RNNSTIDYTS 120
  121 SRSPRVVALS CKMVGGGSDG SLDLCARVCI TDESENVVFH TYVKPTIPVT NYRYEMTGIR 180
  181 PENLRDAMRL KHAQRKVQEF LCNGEPMWKI RPRNGKARIL VGHGLDNHLD SLQLEYSSSM 240
  241 IRDTAEYPPL MKSSKLSNSL KYLTQAYLGY DIHVGIQDPY EDCVATMRLY TRMRYQKHRA 300
  301 EAYPLASDTQ NHNNFAAWRQ NELERMSPEE LLDLSRSDYY CWCLDSVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..165] PSI-BLAST 45.39794 No description for 2i13A was found.
    2 View Details [166..348] PSI-BLAST 22.522879 N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.722279828632226 bayes_pls_golite062009
  • hydrolase activity
    		•  0.29272620969648 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.24934115119652 bayes_pls_golite062009
  • nuclease activity
    		•  0.239989310123501 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle