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Protein Overview: gi|18421620, gi|...

General Information:
Name(s) found: gi|18421620 [NCBI NR]
gi|10178003 [NCBI NR]
Description(s) found:
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  • gi|18421620|ref|NP_568546.1| CIP4 (COP1-interacting protein 4); transcription cofactor [Arabidopsis thaliana] [NCBI NR]
  • gi|10178003|dbj|BAB11376.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9FHU3) Genomic DNA, chromosome 5, P1 clone:MJG14 [athaliana3702.FASTAC.txt]
  • COP1-interacting protein 4 (CIP4) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 COP1-interacting protein 4 (CIP4) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: CIP4 | CIP4 (COP1-INTERACTING PROTEIN 4) | chr5:14740592-14743924 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • CIP4 (COP1-interacting protein 4) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: CIP4 | COP1-interacting protein 4 | chr5:14723362-14726694 REVERSE LENGTH=876 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • COP1-interacting protein 4 OS=Arabidopsis thaliana GN=CIP4 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 876 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: NONE FOUND
    Molecular Function: transcription cofactor activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRETNSSP EIRCVFVETN LDTRLILHVH KDEIISDFKD RLLKEHKQVF PEIGEIQISA  60
   61 LKVKRRRKFY HFSDSLHVCK AFDGISRNWF MYIDAIRVDK GKMYAIMAAD QNLELVEKKE 120
  121 EIANGLVLVD DMNNKDLTSG EGLETEVVEE KTRKRRIISP GGNTSPKKSK VDLSPSAVAA 180
  181 TTELCGKVKG EVVSQSCAVS PREKLDDVVT RADIESGEKS GLSMGEKQQT SVTERLLEEK 240
  241 NLTVNSELVD GHTGGVVKEV PDNQTIKEAL EKVDDLTGTI EQDLEKGGKT ADIVMIDQEK 300
  301 DLPPASKLVD GQITSQVDER GEGRRLAPSA VDNLQTAEVV TNVDNQLEAS SSLTTGPATE 360
  361 KKRKRMKSSK DHIKQNGNEM ADILVDKVGS GEATLIGADE IQAASNLQVA GMASTPHAFV 420
  421 QESKTLDHIG KVTDTEHKVP QERVEIDADQ AKSVKSTKKK SSRKAKTPAK EDTLVDFGAQ 480
  481 NVEPIKVVDG EGHVNDIRNV LDSLQQRTEV EENMEKSGKK SSKRSKKKDS LNIVEEAQVV 540
  541 DSLQQKKEAE ENLEKSGKKS SKKTKKKDSL NIVEEAQVLS VEVNNVAQEE ASPINNPKDT 600
  601 DASFTPAKKT TESNASPLKK ISEVTDNTED LNRSMQVLKE NADMGDNFGS SQKDDIVGGT 660
  661 NKEDQVTGGA KSKKEKKSLD LHPGGSIDGS MKVKETKGRV QPSSSGTSQL QSRAKNDRNG 720
  721 SKVDLSDASM KGTVNNKKEA VKKSSNSVTV NNSKVNVNNK KEVVKKISNS VTANKITTNF 780
  781 FKDAEEDESK TTSSDSSNAP SDSSSDNDSD VTSSMYMKQG NNLVGGTNRL SGSLQDILRS 840
  841 SKSYKAAKLT ASLSQSVAFD DESLGINVVP DSQAAI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..172] MSA 4.011983 View MSA. No confident structure predictions are available.
    2 View Details [173..228] deduced N/A No confident structure predictions are available.
    3 View Details [229..389] deduced N/A No confident structure predictions are available.
    4 View Details [390..596] deduced N/A No confident structure predictions are available.
    5 View Details [597..659] deduced N/A No confident structure predictions are available.
    6 View Details [660..876] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle