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Protein Overview: gi|30680007, gi|...

General Information:
Name(s) found: gi|7549636 [NCBI NR]
gi|30680007 [NCBI NR]
gi|18397713 [NCBI NR]
Description(s) found:
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  • gi|7549636|gb|AAF63821.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30680007|ref|NP_850526.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18397713|ref|NP_566292.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9M7Y3) F3E22.9 protein [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|30680007|ref|NP_850526.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]gi|18397713|ref|NP_566292.1| glycoside hydrolase family 28 protein / polygalact [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycoside hydrolase family 28 protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | chr3:2135125-2136622 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr3:2135119-2136616 REVERSE LENGTH=377 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F3E22.9 protein OS=Arabidopsis thaliana GN=F3E22.9 PE=4 SV=1 [ARATH-contam.fasta]
  • Isoform of Q8RWK6, F3E22.9 protein OS=Arabidopsis thaliana GN=F3E22.9 PE=3 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 377 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: polygalacturonase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFADKGGAQ LYVPPGHWLT GSFSLTSHLT LFLENGAVIV ASQDPSHWEV VDPLPSYGRG  60
   61 IDLPGKRYKS LINGNKLHDV VVTGDNGTID GQGLVWWDRF TSHSLKYNRP HLIEFLSSEN 120
  121 VIVSNLTFLN APAYSIYSIY SSHVYIHKIL AHSSPKSPYT IGIVPDSSDY VCIQNSTINV 180
  181 GYDAISLKSG WDEYGIAYSR PTENVHIRNV YLRGASGSSI SFGSEMSGGI SDVVVDNAHI 240
  241 HYSLTGIAFR TTKGRGGYIK EIDISNIDML RIGTAIVANG SFGSHPDDKY DVNALPLVSH 300
  301 IRLSNISGEN IGIAGKLFGI KESPFSSVTL SNVSLSMSSG SSVSWQCSYV YGSSESVIPE 360
  361 PCPELKRDAD AYGRAAV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..377] PSI-BLAST 42.522879 No description for 2uveA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle