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Protein Overview: gi|15237832, gi|...

General Information:
Name(s) found: gi|15237832 [NCBI NR]
gi|10176847 [NCBI NR]
Description(s) found:
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  • gi|15237832|ref|NP_197769.1| agenet domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10176847|dbj|BAB10053.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9FFA0) Gb|AAF16647.1 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15237832|ref|NP_197769.1| agenet domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Agenet domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | agenet domain-containing protein | chr5:8022219-8024692 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATDUF10, DUF 10 | DOMAIN OF UNKNOWN FUNCTION 724 10 | chr5:8022216-8024689 REVERSE LENGTH=552 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Gb|AAF16647.1 OS=Arabidopsis thaliana GN=DUF 10 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 552 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: NONE FOUND
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRQVPSESL SLSEGCEVEI SYKNNGNESV WYKAILEAKP NSIFKEELSV RLLKDDFSTP  60
   61 LNELRHKVLI RPIPPTNVQA CIDIEIGTFV DADYKDAWWA GFVVKVIDDD KFWVCFDSPP 120
  121 DIIQFDRNHL RPTLEWVDEK IYSWWIIGST RNSEFLKRLA EEPMFSPGTI VELCSKRDEG 180
  181 EVVWVPALVY KEFKENDEYR YIVKDKPLIG RSYKSRPSKT VDLRSLRPIP PPIRVKEYRL 240
  241 DEYIEVYHDG IGWRQGRVVK SEGGVMGSLF QNWCTLLLEA TKKQLMFKQS DLRPLRVWED 300
  301 GVWKTRESSL TQGSGDKTEV ETQRKTFPKK TLPRNQNGSG NDSTLENENS NRKRKREENL 360
  361 CSGSSVEETN ILFEKKLPVW KILESMEVFK TIPQSPHFRP LAEIREDSRE MLAVGMMLTF 420
  421 SCLLEQVKAL QHDEARSSFI SLSNSFAELE KHGFNAQVAQ LRINKLLTLR GMQSRKMDEL 480
  481 KGAKKVTAEK ESVKVENERK ILELQRLNEE MAKEIAQSMS CEGKILQQLD NMKLEFQATA 540
  541 SAPWPKWAFR ST

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] PSI-BLAST 18.30103 Structure of the N-terminal domain of Fragile X Mental Retardation Protein
    2 View Details [144..233] FFAS03 1.31 No description for 2ekoA was found.
    3 View Details [234..552] PSI-BLAST 13.221849 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle