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Protein Overview: gi|133778824, gi...

General Information:
Name(s) found: gi|20197280 [NCBI NR]
gi|18398260 [NCBI NR]
gi|133778824 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • gi|20197280|gb|AAC64224.2| putative splicing factor [Arabidopsis thaliana] [NCBI NR]
  • gi|18398260|ref|NP_565399.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|133778824|gb|ABO38752.1| At2g16940 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 561 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: mRNA processing [IEA]
    Molecular Function: nucleic acid binding [IEA][ISS]
    nucleotide binding [IEA]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFDEYEYLE KTVENPHLEN EVGNGGGDEK VKSEGKERSR SSRHRGDKKK ERDEDEDGRR  60
   61 SKRSRSHHRS RSRDRERDRH RSSREHRDRD REKDVDKEER NGKDRERDRD KDRDSKGRDH 120
  121 EKDRSRRSRS RSERHRSQER EKSLEIEPKE RETKDRDRDR RRHKDKKEDK VEPEADPERD 180
  181 QRTVFAYQIA LRATERDVYE FFSRAGKVRD VRIIMDRISR RSRGIGYVEF YDTMSVPMAI 240
  241 ALSGQPLLGQ PVMVKPSEAE KNLVQSTTAA AGAGGMLGPY SGGARRLYVG NLHINMSEDD 300
  301 LRKVFESFGS VELVQVPRDE TGLCKGFGFV QFARLEDARN ALNLNGQLEI AGRAIKVSAV 360
  361 TDQTEVPEAG QTQTTGDLDD DDGGGLSLNA QSRALLMQKL DRSGTASSTG LTTAASFNGG 420
  421 VSTISSLAAP ALVQGSFPAV AGLAGSGIIP GVIPAGFDPI GVPSECLLLK NMFDPSTETE 480
  481 DDFDEDIKED VKEECSKFGK LNHIFVDKNS VGFVYLRFEN AQAAIGAQRA LHGRWFAGKM 540
  541 ITATYMTTEA YEAKFPESKV V

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..79] MSA 3.173996 View MSA. No confident structure predictions are available.
    2 View Details [80..174] deduced N/A No confident structure predictions are available.
    3 View Details [175..375] PSI-BLAST 37.69897 Poly(A)-binding protein
    4 View Details [376..464] deduced N/A No confident structure predictions are available.
    5 View Details [465..561] PSI-BLAST 7.30103 Splicing factor U2AF 65 KDa subunit


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.62

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle