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Protein Overview: gi|25294251, gi|...

General Information:
Name(s) found: gi|7267292 [NCBI NR]
gi|30680061 [NCBI NR]
gi|30680052 [NCBI NR]
gi|25294251 [NCBI NR]
Description(s) found:
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  • gi|7267292|emb|CAB81074.1| polyubiquitin (ubq10) [Arabidopsis thaliana] [NCBI NR]
  • gi|30680061|ref|NP_849301.1| UBQ10 (POLYUBIQUITIN 10); protein binding [Arabidopsis thaliana] [NCBI NR]
  • gi|30680052|ref|NP_849299.1| UBQ10 (POLYUBIQUITIN 10); protein binding [Arabidopsis thaliana] [NCBI NR]
  • pir||H85066 polyubiquitin (ubq10) [imported] - Arabidopsis thaliana [NCBI NR]
  • (Q9M0W3) Polyubiquitin (ubq10) [athaliana3702.FASTAC.txt]
  • polyubiquitin (ubq10) [Arabidopsis thaliana]gi|30680061|ref|NP_849301.1| polyubiquitin (UBQ10) (SEN3) [Arabidopsis thaliana]gi|30680052|ref|NP_849299.1| polyubiquitin (UBQ10) (SEN3) [Arabidopsis thaliana]gi|25294251|pir||H85066 polyubiquitin (ubq10) [i [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Polyubiquitin (UBQ10) (SEN3), senescence-associated protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: UBQ10 | UBQ10 (POLYUBIQUITIN 10); protein binding | chr4:2718557-2719951 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • polyubiquitin (ubq10) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • UBQ10 (POLYUBIQUITIN 10); protein binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 464 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN  60
   61 IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID NVKAKIQDKE GIPPDQQRLI 120
  121 FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA 180
  181 KIQDKEGIPP DQQRLIFAGK QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT 240
  241 ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR 300
  301 LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL 360
  361 ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEVFLRTS 420
  421 SVSSSLESSL RMDVLWPTTT SRRSLLFTWS CVFVVVSKSR LCYA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] PSI-BLAST 29.0 Solution Structure of S5a UIM-1/Ubiquitin Complex
    2 View Details [86..158] FFAS03 3.77 Ubiquitin-like modifier protein hub1
    3 View Details [159..237] PSI-BLAST 13.69897 Solution Structure of the N-terminal Ubiquitin-like Domain in the Human Ubiquilin 3 (UBQLN3)
    4 View Details [238..296] FFAS03 4.28 No description for 2nvuI was found.
    5 View Details [297..380] PSI-BLAST 26.221849 Crystal structure of a multiple hydrophobic core mutant of ubiquitin
    6 View Details [381..464] FFAS03 4.03 Solution structure of ubiquitin-like domain of hHR23B complexed with ubiquitin-interacting motif of proteasome subunit S5a


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle