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Protein Overview: gi|15237943, gi|...

General Information:
Name(s) found: gi|15237943 [NCBI NR]
gi|10177072 [NCBI NR]
Description(s) found:
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  • gi|15237943|ref|NP_197229.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10177072|dbj|BAB10514.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9FFI4) Similarity to unknown protein [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15237943|ref|NP_197229.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Tetratricopeptide repeat (TPR)-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | tetratricopeptide repeat (TPR)-containing protein | chr5:5679997-5685599 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Protein prenylyltransferase superfamily protein | chr5:5679995-5685597 FORWARD LENGTH=899 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Similarity to unknown protein OS=Arabidopsis thaliana GN=At5g17270 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 899 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDGEVEILR GYELRLLRCT VSFPQTGSPL ESQPLDGTQS GTHPHDSLIT SLLSSIEAGD  60
   61 YLGALSSDAT KLILGDSELN LVDTVDSAEQ VYSELLDKVE SFVVNDSSDE IDKARRAVLV 120
  121 MCLAIATALW FTRCNLTGST EGSTKCSLPL RVSESKELVE WENWAKIQLM SVGSDLLGKF 180
  181 SNLQHLVFAR LLLFKLKDLL FEITSTETFE VRSISWWLVR VLLIHQRVLQ ERSSSLFEML 240
  241 QVYMAEAIDH FGELEKVKSY WGANLLEDEA SSITSTIHLE ACVLQYIYGR IDPSRLQLES 300
  301 AKAAASLEFS VTGALGFRTI HQVDPKAQMV LVANTSSSNG DVRLASEKAD VGPYEAWGGE 360
  361 APEVYMTPKL VNNESEAGKD SVPLKPVEQA LILAQCLLIE RGSRHDEMQR WDMAPYIEAI 420
  421 DSQKSTYFVL RCFCDLLRVR WESTRGRTKG RALEMMDKLV GAINKSDPGV SNRIPLCYAV 480
  481 HLPTIPALRK EYGELLVSCG LVGEAITIFE SLELWDNLIY CYCLLGKKSA AVDLINARLL 540
  541 ERPNDPRLWC SLGDVTINDS CYEKALEVSN DKSVRAKRAL ARSAYNRGDF EKSKMLWEAA 600
  601 MALNSLYPDG WFALGAAALK ARDVQKALDA FTFAVQLDPD NGEAWNNIAC LHMIKKKSKE 660
  661 SFIAFKEALK FKRDSWQMWE NFSHVAMDVG NIDQAFEAIQ QILKMSKNKR VDVVLLDRIM 720
  721 TELEKRNSAC KSSSSSTETE ASSDESTETK PCTATPAETQ RQLELLGKVI QQIVKTESTA 780
  781 EIWGLYARWS RIKGDLTVCS EALLKQVRSY QGSEVWKDKE RFKKFARASL ELCRVYMEIS 840
  841 ASIGSKRELF TAEMHLKNTI KQATVSFLDS EELKELESCL EEVRNVMQKS EEEYRDTKT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] deduced N/A No confident structure predictions are available.
    2 View Details [107..640] PSI-BLAST 10.522879 Clathrin D6 Coat
    3 View Details [641..708] PSI-BLAST 6.045757 Clathrin heavy chain proximal leg segment
    4 View Details [709..794] PSI-BLAST 64.522879 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    5 View Details [795..899] PSI-BLAST 11.522879 Crystal Structure of FKBP52 C-terminal Domain complex with the C-terminal peptide MEEVD of Hsp90


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.80

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle