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Protein Overview: PUM2_ARATH

General Information:
Name(s) found: PUM2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|3980413|gb|AAC95216.1| putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis thaliana] [NCBI NR]
  • pir||E84693 hypothetical protein At2g29190 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15227051|ref|NP_180482.1| APUM2 (Arabidopsis Pumilio 2); RNA binding / binding [Arabidopsis thaliana] [NCBI NR]
  • Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1 [Swiss-Prot]
  • (Q9ZW06) Putative pumilio/Mpt5 family RNA-binding protein [athaliana3702.FASTAC.txt]
  • putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis thaliana]gi|25354256|pir||E84693 hypothetical protein At2g29190 [imported] - Arabidopsis thalianagi|15227051|ref|NP_180482.1| pumilio/Puf RNA-binding domain-containing protein [Arabidopsis th [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Pumilio/Puf RNA-binding domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: APUM2 | APUM2 (ARABIDOPSIS PUMILIO 2); RNA binding | chr2:12551337-12555148 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: APUM2, PUM2 | pumilio 2 | chr2:12544260-12548071 REVERSE LENGTH=972 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • | Symbols: PUM2 | pumilio 2 | chr2:12544260-12548071 REVERSE LENGTH=972 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 972 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: RNA binding [IDA][ISS]
    mRNA binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPELGRRPM HRGNEDSSFG DDYEKEIGVL LGEQQRRQVE ADELERELNL YRSGSAPPTV  60
   61 DGSVSAAGGL FSGGGGAPFL EFGGGNKGNG FGGDDEEFRK DPAYLSYYYA NMKLNPRLPP 120
  121 PLMSREDLRV AQRLKGSSNV LGGVGDRRKV NDSQSLFSMP PGFDQRKQHE FEVEKTSASS 180
  181 SEWDANGLIG LPGLGIGGKQ KSFADIFQAD MGHGHPVTKQ PSRPASRNTF DENVDSKNNL 240
  241 SPSASQGIGA PSPYSYAAVL GSSLSRNGTP DPQAIARVPS PCLTPIGSGR VSSNDKRNTS 300
  301 NQSPFNGGLN ESSDLVNALS GMNLSGSGGL DERGQAEQDV EKVRNYMFGL QGGHNEVNQH 360
  361 GFPNKSDQAQ KATGLLRNSQ LRGAQGSTYN DGGGVATQYQ HLDSPNYCLN NYGLNPAVAS 420
  421 MMANQLGTNN YSPVYENASA ASAMGFSGMD SRLHGGGYVS SGQNLSESRN LGRFSNRMMG 480
  481 GGTGLQSHMA DPMYHQYADS LDLLNDPSMD VNFMGNSYMN MLELQRAYLG AQKSQYGVPY 540
  541 KSGSPNSHTD YGSPTFGSYP GSPLAHHLLP NSLVSPCSPM RRGEVNMRYP SATRNYAGGV 600
  601 MGSWHMDASL DEGFGSSMLE EFKSNKTRGF ELAEIAGHVV EFSSDQYGSR FIQQKLETAT 660
  661 SDEKNMVYEE IMPHALALMT DVFGNYVIQK FFEHGLPPQR RELADKLFDN VLPLSLQMYG 720
  721 CRVIQKAIEV VDLDQKIKMV KELDGHVMRC VRDQNGNHVV QKCIECVPEE NIEFIISTFF 780
  781 GNVVTLSTHP YGCRVIQRVL EHCHDPDTQS KVMDEIMSTI SMLAQDQYGN YVIQHVLEHG 840
  841 KPDERTVIIK ELAGKIVQMS QQKFASNVVE KCLTFGGPEE REFLVNEMLG TTDENEPLQA 900
  901 MMKDQFANYV VQKVLETCDD QQRELILGRI KVHLNALKKY TYGKHIVARV EKLVAAGERR 960
  961 MALQSLTQPQ MA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..545] PSI-BLAST 3.30103 No description for 1y0fB was found.
    2 View Details [546..617] deduced N/A No confident structure predictions are available.
    3 View Details [618..972] PSI-BLAST 147.0 Pumilio 1


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle