Protein Overview: CLC1_ARATH

General Information:
Name(s) found:	CLC1_ARATH [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|4454472\|gb\|AAD20919.1\| expressed protein [Arabidopsis thaliana] [NCBI NR] pir\|\|A84593 hypothetical protein At2g20760 [imported] - Arabidopsis thaliana [NCBI NR] gi\|18399468\|ref\|NP_565484.1\| protein binding / structural molecule [Arabidopsis thaliana] [NCBI NR] gi\|16323101\|gb\|AAL15285.1\| At2g20760/F5H14.27 [Arabidopsis thaliana] [NCBI NR] gi\|15982817\|gb\|AAL09756.1\| At2g20760/F5H14.27 [Arabidopsis thaliana] [NCBI NR] gi\|108385429\|gb\|ABF85787.1\| At2g20760 [Arabidopsis thaliana] [NCBI NR] Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1 [Swiss-Prot] (Q9SKU1) At2g20760 protein (At2g20760/F5H14.27) [athaliana3702.FASTAC.txt] expressed protein [Arabidopsis thaliana]gi\|16323101\|gb\|AAL15285.1\| At2g20760/F5H14.27 [Arabidopsis thaliana]gi\|15982817\|gb\|AAL09756.1\| At2g20760/F5H14.27 [Arabidopsis thaliana]gi\|25411992\|pir\|\|A84593 hypothetical protein At2g20760 [imported] - Arabidop [nrdb_11152004_Chlamydomonas] Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta] \| Symbols: \| protein binding / protein transporter/ structural molecule \| chr2:8950360-8952189 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta] At2g20760/F5H14.27 [Arabidopsis thaliana] [nr-271106-contam.fasta] unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta] At2g20760 [Arabidopsis thaliana] [nr-271106-contam.fasta] expressed protein [Arabidopsis thaliana] [nr-271106-contam.fasta] \| Symbols: \| Clathrin light chain protein \| chr2:8943279-8945108 REVERSE LENGTH=338 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
Organism:	Arabidopsis thaliana
Length:	338 amino acids
Gene Ontology:
Cellular Component:	plasma membrane [IDA]
Biological Process:	vesicle-mediated transport [IEA] intracellular protein transport [IEA]
Molecular Function:	protein binding [IEA] structural molecule activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA  60
   61 SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD PNEMREEGFQ RREWRRLNTI 120
  121 HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV 180
  181 DKHYWKAIAE LIPREVPNIE KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT 240
  241 NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK 300
  301 RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..73]	deduced	N/A	No confident structure predictions are available.
2	View Details	[74..171]	PSI-BLAST	24.522879	Clathrin D6 Coat
3	View Details	[172..338]	PSI-BLAST	17.522879	No description for 1y0fA was found.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Protein Overview: CLC1_ARATH

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: