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Protein Overview: gi|9757914, gi|1...

General Information:
Name(s) found: gi|9757914 [NCBI NR]
gi|15238566 [NCBI NR]
Description(s) found:
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  • gi|9757914|dbj|BAB08361.1| Ta11-like non-LTR retroelement protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|15238566|ref|NP_200801.1| DC1 domain-containing protein / UV-B light-insensitive protein, putative [Arabidopsis thaliana] [NCBI NR]
  • (Q9FJE3) Ta11-like non-LTR retroelement protein-like [athaliana3702.FASTAC.txt]
  • Ta11-like non-LTR retroelement protein-like [Arabidopsis thaliana]gi|15238566|ref|NP_200801.1| DC1 domain-containing protein / UV-B light-insensitive protein, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DC1 domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DC1 domain-containing protein / UV-B light-insensitive protein, putative | chr5:24151752-24153722 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Ta11-like non-LTR retroelement protein-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • protein binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr5:24134526-24136496 FORWARD LENGTH=656 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cysteine/histidine-rich C1 domain-containing protein OS=Arabidopsis thaliana GN=At5g59930 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 656 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: intracellular signaling pathway [IEA]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTSAVQLPF RDYSLQPAPR YINARCHICS VTGAIYNGYF CNDPIVWMHK ECVELPSEIN  60
   61 HLFHPQHPLL LTYEEGWWSC FCALCGETKP AKYFYSCSTC KIKVDLTCGM NPPPPAIEHP 120
  121 ICHDHPLVFL KKRQEKTPCE VCKNRILGSS YSCLGCELYF HVGCIHLSKE VNHPCHSDHP 180
  181 LMLVESESLT DNDKKTCFLC GQQPHGILYH CSICNFTLCI GCIKSPPPLV VENVKTHKHP 240
  241 LTFFPRGVYC TCNVCGVKGL ILSYMCLQCG FAVHCSCVDL PQVININRHD HRISFTQHLG 300
  301 PGYLNCGVCR RSVCQFNGAY SCLVCPNYAV HSRCATRYDI WDGVELEGKA ENIEDIAPFK 360
  361 VVGDDLIRHF SHSKHSLRLH KNNIIYDDST RCEACGHPVE FGRIYNCEEC CFILHEKCAN 420
  421 LPMKKRLVFS TLPFLLLGPG NDVCKVLDCK LCGMFFTGFE YKSQERRQSD IDVHCGSLTE 480
  481 PFVHDGHLHP LYFDQKQKEL PCNACQKTIR DYMLCCADCD FNLCLWCASL PKKIRHSNDE 540
  541 HILTLCCGEE ANGKYWCDIC EAELDPSKWF YTCFGCGGTL HVECVLGDFS RLMPGCTIDY 600
  601 RVYTVEVVFN NHNTRPMCSR CHSRCKVSVI LKFREGNIVY FFCSRSCFLM HFSYYL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..75] deduced N/A No confident structure predictions are available.
    2 View Details [76..176] FFAS03 2.19 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    3 View Details [177..245] PSI-BLAST 5.39794 Crystal Structure of the Human Beta2-Chimaerin
    4 View Details [246..346] FFAS03 2.91 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    5 View Details [347..424] PSI-BLAST 3.09691 No description for 2ysmA was found.
    6 View Details [425..588] PSI-BLAST 4.045757 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    7 View Details [589..656] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle