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Protein Overview: gi|15239017, gi|...

General Information:
Name(s) found: gi|15239017 [NCBI NR]
gi|10177142 [NCBI NR]
Description(s) found:
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  • gi|15239017|ref|NP_199078.1| zinc finger (C2H2 type) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10177142|dbj|BAB10502.1| C2H2-type zinc finger protein-like [Arabidopsis thaliana] [NCBI NR]
  • (Q9FJV4) C2H2-type zinc finger protein-like [athaliana3702.FASTAC.txt]
  • C2H2-type zinc finger protein-like [Arabidopsis thaliana]gi|15239017|ref|NP_199078.1| zinc finger (C2H2 type) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Zinc finger (C2H2 type) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | zinc finger (C2H2 type) family protein | chr5:17105923-17106825 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • C2H2-type zinc finger protein-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr5:17088695-17089597 FORWARD LENGTH=300 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • C2H2-type zinc finger protein-like OS=Arabidopsis thaliana GN=At5g42640 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 300 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: regulation of transcription [TAS]
    Molecular Function: nucleic acid binding [ISS]
    zinc ion binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIPNRFNI YGGDTTNHRE SLPIEMNHNS RMVRSMFITS DRMNHRDLFS SPPSFSSYQN  60
   61 SHISSSSVGF NNSHMTYHML KRNYDSVSRA DYFSTKDHSH FTQVSFTQTI TNKYTTIVPS 120
  121 NIFDTVHYDI GRVKRAIDFR NIWNPKSHLP KKFNRQCEIL NPTPLNIVFP HQDSADRQHL 180
  181 DIIFSSSKHN HVFQDGRSLK KISEPTNLFE KSNSYDSQED EKIDAYQYDG RTHSLPYTKY 240
  241 GPYTCPRCNG VFDTSQKFAA HMLSHYNNET DKERDQRFRA RNKKRYRKFM DSLKISKQKI 300
  301

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..153] deduced N/A No confident structure predictions are available.
    2 View Details [154..300] FFAS03 0.972 Solution Structure of a Human C2H2-type Zinc Finger Protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.304205134456748 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle