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Protein Overview: gi|10177266, gi|...

General Information:
Name(s) found: gi|15239528 [NCBI NR]
gi|10177266 [NCBI NR]
Description(s) found:
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  • gi|15239528|ref|NP_200215.1| DC1 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10177266|dbj|BAB10734.1| CHP-rich zinc finger protein-like [Arabidopsis thaliana] [NCBI NR]
  • (Q9FN23) CHP-rich zinc finger protein-like [athaliana3702.FASTAC.txt]
  • CHP-rich zinc finger protein-like [Arabidopsis thaliana]gi|15239528|ref|NP_200215.1| DC1 domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DC1 domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DC1 domain-containing protein | chr5:21946073-21947863 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • CHP-rich zinc finger protein-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr5:21928847-21930637 REVERSE LENGTH=596 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • CHP-rich zinc finger protein-like OS=Arabidopsis thaliana GN=At5g54040 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 596 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: intracellular signaling pathway [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPDDFQLAT MPKLTVPFHD HPMSSSYCIF LESCSLCSFS KNSSWLRRSV TCISYECTDC  60
   61 GLTLHKECVD HLFLNRPFLC NHVLKIYRNT FAWPDPDRKD DLSCHFCRRK LTSFFARLRN 120
  121 LPSFFARCTI CNINVDKKCL MALGPPLAIF EPKHHEHSLT LLLRLVTFTC NACGVVDDRN 180
  181 PYVCLECNLM VHKECVQNLP RVISINRHDH RISHTFHLGQ GEGDWECGVC RKTINWVYGG 240
  241 YKCSRCPSYA VHSRCATRYE VWDGLELEDV PEEEEEIEDP FKVINEKGDI IHFSHEEHVL 300
  301 RLDEIYVTDD ANMRCRCCVL AINGDPCYRC VECDFILHKA CANLPRKMRH LLHKHKLTLS 360
  361 STGNRFLRCK ACDIKTNGFI YECLHEGCKS ISFTYDVRCS SVSEPFHHDL HQHPLYFTLE 420
  421 KTNKCHACKR KIDWNPLNCT VCDDYSLCTR CAALPRKVKH RCDDHYLSLC QGVGSASGDL 480
  481 WCDICETKTD PSVFYYTCDD CGLSLHIDCV LGDCYYTKVG CPGPRMEVHP NNGATRPICT 540
  541 KCELRCKFPF FIKGTEEDLG IWYCSKDLCP KEFNFAVSPY RFALDIGLRD WDLRVF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..149] PSI-BLAST 3.69897 Crystal Structure of the Human Beta2-Chimaerin
    2 View Details [150..453] FFAS03 0.987 Crystal structure of N-terminal 3 domains of CI-MPR
    3 View Details [454..517] PSI-BLAST 4.154902 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    4 View Details [518..596] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle