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Protein Overview: ORP1B_ARATH

General Information:
Name(s) found: ORP1B_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Oxysterol-binding protein-related protein 1B OS=Arabidopsis thaliana GN=ORP1B PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 489 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: steroid metabolic process [IEA][ISS]
    Molecular Function: oxysterol binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEARVISCTT FGDNKVVKIA VLNHQAITKY KAGENETTVV VSDDTCPEKD VKEIKKFCEK  60
   61 LGYVYEGRLS EEYTQTNTGP DDDWITNGFE SDDDVDPSIK TIGFNYPHVN RRNKLPDPVE 120
  121 KEKSVSLWSM IKDNIGKDLT KVCLPVYFNE PLSSLQKCFE DLEYSYLLDQ ASEWGKRGNN 180
  181 LMRILNVAAF AVSGYASTKG RICKPFNPML GETYEADYPD KGLRFFSEKV SHHPMIVACH 240
  241 CDGTGWKFWG DSNLKSKFWG RSIQLDPIGL LTLQFDDGEI VQWSKVTTSI YNLILGKLYC 300
  301 DHYGTMLIEG NGEYSCKLKF KKQSMMDRNP HQVQGIVEDK NGKTVAKLFG KWDESMYYVM 360
  361 VNQGKESESH LLWKRNKPLE NPTKYNLTRF GITLNELTPD LKEMLPPTDS RLRPDQRYLE 420
  421 KGEFEMGNRE KLRLEQRQRQ AREKQERGWK PTWFSKEKGS ETYRYIGGYW EARDSGRWDD 480
  481 CPDIFGQVH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..80] MSA 1.125991 View MSA. No confident structure predictions are available.
    2 View Details [81..489] PSI-BLAST 70.69897 Structure of yeast oxysterol binding protein Osh4 in complex with 7-hydroxycholesterol

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • sterol binding
    		•  3.12877992228795 bayes_pls_golite062009
  • steroid binding
    		•  2.54679035876403 bayes_pls_golite062009
  • binding
    		•  1.67154210149282 bayes_pls_golite062009
  • lipid binding
    		•  1.46539100663772 bayes_pls_golite062009
  • oxysterol binding
    		•  1.1738554488982 bayes_pls_golite062009
  • phospholipid binding
    		•  0.0867097353003303 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle