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Protein Overview: SMC6B_ARATH

General Information:
Name(s) found: SMC6B_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Structural maintenance of chromosomes protein 6B OS=Arabidopsis thaliana GN=SMC6B PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1057 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    chromosome [IEA]
    Biological Process: sister chromatid cohesion [IMP]
    response to X-ray [IMP]
    double-strand break repair via homologous recombination [IMP]
    chromosome segregation [ISS]
    double-strand break repair [IMP]
    Molecular Function: ATP binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKSGARASD SFIKQRSGSG SILRIKVENF MCHSNLQIEF GEWVNFITGQ NGSGKSAILT  60
   61 ALCVAFGCRA RGTQRAATLK DFIKTGCSYA VVQVEMKNSG EDAFKPEIYG GVIIIERRIT 120
  121 ESATATVLKD YLGKKVSNKR DELRELVEHF NIDVENPCVV MSQDKSREFL HSGNDKDKFK 180
  181 FFFKATLLQQ VNDLLQSIYE HLTKATAIVD ELENTIKPIE KEISELRGKI KNMEQVEEIA 240
  241 QRLQQLKKKL AWSWVYDVDR QLQEQTEKIV KLKERIPTCQ AKIDWELGKV ESLRDTLTKK 300
  301 KAQVACLMDE STAMKREIES FHQSAKTAVR EKIALQEEFN HKCNYVQKIK DRVRRLERQV 360
  361 GDINEQTMKN TQAEQSEIEE KLKYLEQEVE KVETLRSRLK EEENCFLEKA FEGRKKMEHI 420
  421 EDMIKNHQKR QRFITSNIND LKKHQTNKVT AFGGDRVINL LQAIERNHRR FRKPPIGPIG 480
  481 SHVTLVNGNK WASSVEQALG TLLNAFIVTD HKDSLTLRGC ANEANYRNLK IIIYDFSRPR 540
  541 LNIPRHMVPQ TEHPTIFSVI DSDNPTVLNV LVDQSGVERQ VLAENYEEGK AVAFGKRLSN 600
  601 LKEVYTLDGY KMFFRGPVQT TLPPLSRRPS RLCASFDDQI KDLEIEASKE QNEINQCMRR 660
  661 KREAEENLEE LELKVRQLKK HRSQAEKVLT TKELEMHDLK NTVAAEIEAL PSSSVNELQR 720
  721 EIMKDLEEID EKEAFLEKLQ NCLKEAELKA NKLTALFENM RESAKGEIDA FEEAENELKK 780
  781 IEKDLQSAEA EKIHYENIMK NKVLPDIKNA EANYEELKNK RKESDQKASE ICPESEIESL 840
  841 GPWDGSTPEQ LSAQITRMNQ RLHRENQQFS ESIDDLRMMY ESLERKIAKK RKSYQDHREK 900
  901 LMACKNALDS RWAKFQRNAS LLRRQLTWQF NAHLGKKGIS GHIKVSYENK TLSIEVKMPQ 960
  961 DATSNVVRDT KGLSGGERSF STLCFALALH EMTEAPFRAM DEFDVFMDAV SRKISLDALV1020
 1021 DFAIGEGSQW MFITPHDISM VKSHERIKKQ QMAAPRS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..84] PSI-BLAST 13.154902 The Rad50 signature motif: essential to ATP binding and biological function
    2 View Details [85..403] PSI-BLAST 15.522879 Heavy meromyosin subfragment
    3 View Details [404..619] deduced N/A No confident structure predictions are available.
    4 View Details [620..913] PSI-BLAST 9.522879 Tropomyosin
    5 View Details [914..1057] PSI-BLAST 17.154902 Structural biochemistry of ATP-driven dimerization and DNA stimulated activation of SMC ATPases.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle