YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|12324934, gi|...

General Information:
Name(s) found: gi|25404432 [NCBI NR]
gi|15222509 [NCBI NR]
gi|12324934 [NCBI NR]
Description(s) found:
Found 9 descriptions.
SHOW ALL
  • pir||G96661 hypothetical protein F24D7.13 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15222509|ref|NP_176555.1| ATMURE/PDE316 (PIGMENT DEFECTIVE EMBRYO); ATP binding / ligase [Arabidopsis thaliana] [NCBI NR]
  • gi|12324934|gb|AAG52413.1|AC011622_1 putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; 54319-51679 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 767 amino acids

    Gene Ontology:
    Cellular Component: nucleoid [IDA]
    chloroplast [IDA]
    Biological Process: chloroplast fission [IMP]
    biosynthetic process [ISS]
    chloroplast organization [IMP]
    Molecular Function: ATP binding [IEA][ISS]
    acid-amino acid ligase activity [IEA]
    ligase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFTFLSPHP VFLSLTGTTS SFSYKPVLLP FSRNSRTLTV AAGPARRNSY PNPADDDPPE  60
   61 APEDSMHGVS KFQQIQRQAA RARKLEEEDF EKNRNTYLSA IADVEDAAET GRDDEESGGD 120
  121 LFSDIDRAIS MKRSEFVKQG LLKPNPPKTA SLKKIGEEGN EEEGDVTDDV DELDEEEVVD 180
  181 LDEIDKLTGL TEISDEEDWV DEEGNTRINK KKEFGSDHQF EFDLDDFGES KARIVEPKFK 240
  241 MCLAELLDES KVVPISVYGD LDVEITGIQH DSRGVSAGDL FVCCLGSENF LSEADKRGAV 300
  301 AVVASKEIDI EDTLGCRALV IVEDTNAVLA ALASSFYRHP SKNMSVIGVT GTDGKTTTTY 360
  361 LIKSLYEAMG VRTGMFSTVS CYIHGDNKLD TPNATMNPDA VLVQSLMAKM LHNGTESLVM 420
  421 EASPQELALG KCDEVDFDIA VFTNLTRENT DFRGTDEEYR DAEAKLFSRM VDPERHRKVV 480
  481 NIDDPNAAFF VQQGNPNVPV VTFAMENTKA DVHPLKFELS LFETQVLVNT PQGILEISSG 540
  541 LLGRHNIYNI LAAVAVGIAV GAPLEDIVRG VEEVDAVPGR CELIDEEQAF GVIVDHANTP 600
  601 DGLSRLLDSI RELKPRRIIT VIGCEGENER GKRPLMTKIA TEKSDVTMLT SDNPRNEDPL 660
  661 DILDDMLSGI GWTMQEYLKH GEHDYYPPLA NGHRLFLHDI RRVAVRCAVA MGEEGDMVVV 720
  721 AGKGHEAYQL EGEKKEFYDD REECREALQY VDELHQAGID TSEFPWR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..237] deduced N/A No confident structure predictions are available.
    2 View Details [238..767] PSI-BLAST 98.0 UDP-N-acetylmuramyl tripeptide synthetase MurE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • acid-amino acid ligase activity
    		•  4.86493054281191 bayes_pls_golite062009
  • catalytic activity
    		•  3.03081854683329 bayes_pls_golite062009
  • UDP-N-acetylmuramate-L-alanine ligase activity
    		•  2.62956763198067 bayes_pls_golite062009
  • UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity
    		•  2.38541436302257 bayes_pls_golite062009
  • ligase activity
    		•  2.2556848409907 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  2.19206014001612 bayes_pls_golite062009
  • UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
    		•  1.471039191151 bayes_pls_golite062009
  • UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
    		•  1.15437935952018 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle