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Protein Overview: RPOT2_ARATH

General Information:
Name(s) found: RPOT2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9755615|emb|CAC01769.1| DNA-directed RNA polymerase (mitochondrial) [Arabidopsis thaliana] [NCBI NR]
  • gi|75311147|sp|Q9LFV6.1|RPOT2_ARATH RecName: Full=DNA-directed RNA polymerase 2, chloroplastic/mitochondrial; Flags: Precursor [NCBI NR]
  • gi|15242369|ref|NP_197074.1| DNA-directed RNA polymerase (RPOT2) [Arabidopsis thaliana] [NCBI NR]
  • pir||T51399 DNA-directed RNA polymerase, mitochondrial - Arabidopsis thaliana [NCBI NR]
  • gi|11340683|emb|CAC17120.1| phage-type RNA polymerase rpoT2 [Arabidopsis thaliana] [NCBI NR]
  • DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RPOT2 PE=1 SV=1 [Swiss-Prot]
  • (Q9LFV6) DNA-directed RNA polymerase (Mitochondrial) (Phage-type RNA polymerase rpoT2) [athaliana3702.FASTAC.txt]
  • phage-type RNA polymerase rpoT2 [Arabidopsis thaliana]gi|9755615|emb|CAC01769.1| DNA-directed RNA polymerase (mitochondrial) [Arabidopsis thaliana]gi|15242369|ref|NP_197074.1| DNA-directed RNA polymerase (RPOT2) [Arabidopsis thaliana]gi|11357270|pir||T [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DNA-directed RNA polymerase (RPOT2) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DNA-directed RNA polymerase (RPOT2) | chr5:5115796-5121612 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA-directed RNA polymerase (mitochondrial) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor [nr-271106-contam.fasta]
  • phage-type RNA polymerase rpoT2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | DNA/RNA polymerases superfamily protein | chr5:5115793-5121609 REVERSE LENGTH=1011 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1011 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [TAS]
    mitochondrion [TAS]
    thylakoid membrane [TAS]
    Biological Process: transcription [IEA]
    Molecular Function: DNA binding [ISS]
    RNA polymerase activity [TAS]
    DNA-directed RNA polymerase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS  60
   61 QTRGLLVSSP ESIFSKNLSF RFPVLGSPCH GKGFRCLSGI TRREEFSKSE RCLSGTLARG 120
  121 YTSVAEEEVL STDVEEEPEV DELLKEMKKE KKRESHRSWR MKKQDQFGMG RTKFQNLWRR 180
  181 QVKIETEEWE RAAAEYMELL TDMCEQKLAP NLPYVKSLFL GWFEPLRDAI AKDQELYRLG 240
  241 KSKATYAHYL DQLPADKISV ITMHKLMGHL MTGGDNGCVK VVHAACTVGD AIEQEIRICT 300
  301 FLDKKKKGDD NEESGGVENE TSMKEQDKLR KKVNELIKKQ KLSAVRKILQ SHDYTKPWIA 360
  361 DVRAKVGSRL IELLVRTAYI QSPADQQDND LPDVRPAFVH TFKVAKGSMN SGRKYGVIEC 420
  421 DPLVRKGLEK SGRYAVMPYM PMLVPPLKWS GYDKGAYLFL TSYIMKTHGA KQQREALKSA 480
  481 PKGQLQPVFE ALDTLGSTKW RVNKRVLTVV DRIWSSGGCV ADMVDRSDVP LPEKPDTEDE 540
  541 GILKKWKWEV KSAKKVNSER HSQRCDTELK LSVARKMKDE EAFYYPHNMD FRGRAYPMPP 600
  601 HLNHLGSDLC RGVLEFAEGR PMGISGLRWL KIHLANLYAG GVDKLSLDGR LAFTENHLDD 660
  661 IFDSADRPLE GSRWWLQAED PFQCLAVCIS LTEALRSPSP ETVLSHIPIH QDGSCNGLQH 720
  721 YAALGRDTLG AEAVNLVAGE KPADVYSGIA TRVLDIMRRD ADRDPEVFPE ALRARKLLNQ 780
  781 VDRKLVKQTV MTSVYGVTYI GARDQIKRRL KERSDFGDEK EVFGAACYAA KVTLAAIDEM 840
  841 FQAARAIMRW FGECAKIIAS ENETVRWTTP LGLPVVQPYH QMGTKLVKTS LQTLSLQHET 900
  901 DQVIVRRQRT AFPPNFIHSL DGSHMMMTAV ACKRAGVCFA GVHDSFWTHA CDVDKLNIIL 960
  961 REKFVELYSQ PILENLLESF EQSFPHLDFP PLPERGDLDL KVVLDSPYFF N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] deduced N/A No confident structure predictions are available.
    2 View Details [86..1011] PSI-BLAST 1000.0 No description for 2pi4A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle