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Protein Overview: RPD5B_ARATH

General Information:
Name(s) found: RPD5B_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana GN=NRPD5B PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 218 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: transcription [IEA][ISS]
    Molecular Function: DNA binding [IEA][ISS]
    DNA-directed RNA polymerase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKGKEIVV GHSISKSSVE CHKYYLARRT TMEMLRDRGY DVSDEDINLS LQQFRALYGE  60
   61 HPDVDLLRIS AKHRFDSSKK ISVVFCGTGI VKVNAMRVIA ADVLSRENIT GLILVLQSHI 120
  121 TNQALKAVEL FSFKVELFEI TDLLVNVSKH VLRPKHQVLN DKEKESLLKK FSIEEKQLPR 180
  181 LSSKDPIVRY YGLETGQVMK VTYKDELSES HVTYRCVS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..218] PSI-BLAST 74.69897 Eukaryotic RPB5 N-terminal domain; Eukaryotic RPB5 C-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle