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Protein Overview: gi|15229491, gi|...

General Information:
Name(s) found: gi|15229491 [NCBI NR]
gi|11994636 [NCBI NR]
Description(s) found:
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  • gi|15229491|ref|NP_189384.1| DC1 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|11994636|dbj|BAA95723.2| CHP-rich zinc finger protein-like [Arabidopsis thaliana] [NCBI NR]
  • (Q9LTY3) CHP-rich zinc finger protein-like [athaliana3702.FASTAC.txt]
  • DC1 domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DC1 domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DC1 domain-containing protein | chr3:10170479-10172467 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • CHP-rich zinc finger protein-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr3:10169242-10171230 REVERSE LENGTH=662 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • CHP-rich zinc finger protein-like OS=Arabidopsis thaliana GN=At3g27473 PE=4 SV=1 [ARATH-contam.fasta]
  • Cysteine/histidine-rich C1 domain-containing protein OS=Arabidopsis thaliana GN=At3g27473 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 662 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: intracellular signaling pathway [IEA]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFRLEGHEH RVSIVSSGDS LECDACDRSS GDGFSCSECK FTVHRKCAFV FMTEDIFHHP  60
   61 SHDGHCLKLL TTGAPVHTDS KCHLCGKNTK HLLYHCYDCK VNLDIDCMID GICTLARLSK 120
  121 PWHPHLLLMV DFSSDMWCDF CYEGGKHGYF CPRCRLVIHE SCVSVFDSPE INHPSHLSHP 180
  181 LKLITNGAPD YTEDRSCHIC GKETGNLLYH CDICKFNLDM ECAVENPIPV ALSDLKVHEH 240
  241 TLTLMPRLIS FICDACGTKG DRAPYVCVQC DFRMFHQKCA RLPRVIHVNH HDHRVSYKYP 300
  301 LGPGEWRCGV CWEEIDWSYG AYSCSLCPNY AIHSLCATRK DVWDGKELDG VPEEVEDIEP 360
  361 FKRNDDNTIT HFAHEHNLSL HNDDEESSLC GACVHPIGSY TFYKCSKSYC GFFLHERCAN 420
  421 LATKKRHFLS PQPLDLSLQW IPYVLGRCRA CRQMFSEGFI YNSYRDKFDL LCSSITVPFI 480
  481 HGSHDHHLLY YKLRYGQVKT CQNCGIDETE VLGCSKCNYY LDFCCATLPK TVMLPRYDDH 540
  541 PLTLCYGDEN ASGKYWCDIC ERETNPKTWF YTCKDCGVTF HILCVVGDIR YAKPGGKING 600
  601 DYELLANNSS SRPLCSTCHC RCPGPFILNK ERNNIFFCSY YCLGLSREHA YSSVDVCPPW 660
  661 AI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..168] FFAS03 1.17 ESCRT-II
    2 View Details [169..225] PSI-BLAST 6.09691 NMR STRUCTURE OF A PROTEIN KINASE C-G PHORBOL-BINDING DOMAIN, MINIMIZED AVERAGE STRUCTURE
    3 View Details [226..428] FFAS03 1.1 Cysteine-rich (intestinal) protein, CRP, CRIP
    4 View Details [429..534] PSI-BLAST 4.045757 No description for 2ysmA was found.
    5 View Details [535..662] PSI-BLAST 5.0 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.175200369479833 bayes_pls_golite062009
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle