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Protein Overview: AG104_ARATH

General Information:
Name(s) found: AG104_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9280686|gb|AAF86555.1|AC069252_14 F2E2.20 [Arabidopsis thaliana] [NCBI NR]
  • gi|67633378|gb|AAY78614.1| MADS-box family protein [Arabidopsis thaliana] [NCBI NR]
  • pir||A86354 protein F2E2.20 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15219223|ref|NP_173632.1| AGL104 (AGAMOUS-LIKE 104); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • Agamous-like MADS-box protein AGL104 OS=Arabidopsis thaliana GN=AGL104 PE=1 SV=1 [Swiss-Prot]
  • (Q9LM46) F2E2.20 [athaliana3702.FASTAC.txt]
  • protein F2E2.20 [imported] - Arabidopsis thalianagi|15219223|ref|NP_173632.1| MADS-box family protein [Arabidopsis thaliana]gi|9280686|gb|AAF86555.1| F2E2.20 [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 MADS-box family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: AGL104 | AGL104; DNA binding / transcription factor | chr1:7812376-7814248 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MADS-box family protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • F2E2.20 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AGL104 | AGAMOUS-like 104 | chr1:7812387-7814259 REVERSE LENGTH=335 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F2E2.20 OS=Arabidopsis thaliana GN=AGL104 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 335 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: pollen development [IGI]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK  60
   61 TRIEDVFSRF INLPKQERES ALYFPDQNRR PDIQNKECLL RILQQLKTEN DIALQVTNPA 120
  121 AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR 180
  181 RDHLMSNHLS SYEASTMQPN IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA 240
  241 MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE 300
  301 MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..83] PSI-BLAST 24.154902 Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2
    2 View Details [84..241] MSA 10.518995 View MSA. No confident structure predictions are available.
    3 View Details [242..335] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle