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Protein Overview: PP425_ARATH

General Information:
Name(s) found: PP425_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 646 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: RNA modification [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPTQTLFSP GGNSPASSPA SHPSSLFPQI NNCRTIRDLS QIHAVFIKSG QMRDTLAAAE  60
   61 ILRFCATSDL HHRDLDYAHK IFNQMPQRNC FSWNTIIRGF SESDEDKALI AITLFYEMMS 120
  121 DEFVEPNRFT FPSVLKACAK TGKIQEGKQI HGLALKYGFG GDEFVMSNLV RMYVMCGFMK 180
  181 DARVLFYKNI IEKDMVVMTD RRKRDGEIVL WNVMIDGYMR LGDCKAARML FDKMRQRSVV 240
  241 SWNTMISGYS LNGFFKDAVE VFREMKKGDI RPNYVTLVSV LPAISRLGSL ELGEWLHLYA 300
  301 EDSGIRIDDV LGSALIDMYS KCGIIEKAIH VFERLPRENV ITWSAMINGF AIHGQAGDAI 360
  361 DCFCKMRQAG VRPSDVAYIN LLTACSHGGL VEEGRRYFSQ MVSVDGLEPR IEHYGCMVDL 420
  421 LGRSGLLDEA EEFILNMPIK PDDVIWKALL GACRMQGNVE MGKRVANILM DMVPHDSGAY 480
  481 VALSNMYASQ GNWSEVSEMR LRMKEKDIRK DPGCSLIDID GVLHEFVVED DSHPKAKEIN 540
  541 SMLVEISDKL RLAGYRPITT QVLLNLEEED KENVLHYHSE KIATAFGLIS TSPGKPIRIV 600
  601 KNLRICEDCH SSIKLISKVY KRKITVRDRK RFHHFQDGSC SCMDYW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] FFAS03 1.97 No description for 2ondA was found.
    2 View Details [184..646] PSI-BLAST 14.045757 No description for 2gw1A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle