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Protein Overview: gi|71905611, gi|...

General Information:
Name(s) found: gi|71905611 [NCBI NR]
gi|15238884 [NCBI NR]
gi|10177258 [NCBI NR]
Description(s) found:
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  • gi|71905611|gb|AAZ52783.1| hypothetical protein At5g53960 [Arabidopsis thaliana] [NCBI NR]
  • gi|15238884|ref|NP_200207.1| ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) [Arabidopsis thaliana] [NCBI NR]
  • gi|10177258|dbj|BAB10726.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9FN31) Genomic DNA, chromosome 5, TAC clone:K19P17 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15238884|ref|NP_200207.1| hypothetical protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) | chr5:21924951-21925678 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein At5g53960 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ATP binding;DNA binding;DNA topoisomerase (ATP-hydrolyzing)s | chr5:21907725-21908452 FORWARD LENGTH=189 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Mid-1-related chloride channel domain-containing protein OS=Arabidopsis thaliana GN=At5g53960 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 189 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: DNA topological change [IEA]
    DNA metabolic process [IEA]
    Molecular Function: ATP binding [IEA]
    DNA binding [IEA]
    DNA topoisomerase (ATP-hydrolyzing) activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASTSQLED TTREIIEGTS ILNIDDTSIL NIDDVMTSQL EDTIEKLKKV VRSLEEINRN  60
   61 STMASLTYKL YRFILEKEDE AAAELNAVDT DSIETKLVKL ENKQRYIREV EDNPIDIRSL 120
  121 YRPKLVKLLK ERGFTPFPSE DKPFSHYDYL DVALHMELPI QKYEELCDQK NVLQDIVSIL 180
  181 KRIIDAYQH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..189] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle