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Protein Overview: gi|9757830, gi|1...

General Information:
Name(s) found: gi|9757830 [NCBI NR]
gi|15239165 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|9757830|dbj|BAB08267.1| CHP-rich zinc finger protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|15239165|ref|NP_199118.1| DC1 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 551 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: intracellular signaling pathway [IEA]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEIGETHES ADGGVLSPFH EHPLYPTKDS STPCVGCDGD ETAGKCSCHI CEIYVHKDCL  60
   61 EIINPSNPTY HLSLTDRYGK LFRCSICTSI SYRYIYLCSF SGLPVCEKCA RKPFTIDPGR 120
  121 AHEHPLLVFL KGSFSFPCDA CGVNDAKSCL CLCIPCRFTI HRKCVYLPRV ICINRHDHRI 180
  181 SHVPRLGSGN WSCGVCRKEV NGMHGAFSCL TCTFAVHSRC AIRSNVWDGI ELEGVPEEDP 240
  241 AKNLPFKVVG EGLIKHFTHE HNLRLINEDD ILYDKSKQCH GCVLPIFFNA CYICTHCDFI 300
  301 LHETCANLSK KKRHPSVSRQ LTLYAKHYYG MDSFSWDGPF SCFVCSQRCS GFAYVEDNGG 360
  361 RPGFTIDVRC VSIYAGFVHN SQPHSMLVIS DDWSVSDRNK CSRCGKGGND VWCLTGREDL 420
  421 FMCYKCATIP ELAMHKYDVH LLSLRFSENA IGDYWCDICE KIVDPHKWFY TCDMCSTTLH 480
  481 IDCVLGAEPY LRVGSTFKLG RFVLEVLSND YASRPRCDTC SSRIEDIVVY KSEDVYFCSL 540
  541 TCIEKNPRRA R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..100] deduced N/A No confident structure predictions are available.
    2 View Details [101..177] FFAS03 2.4 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    3 View Details [178..270] PSI-BLAST 3.221849 Crystal Structure of the Human Beta2-Chimaerin
    4 View Details [271..358] deduced N/A No confident structure predictions are available.
    5 View Details [359..427] FFAS03 2.28 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    6 View Details [428..551] PSI-BLAST 3.522879 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  0.0196698141692984 bayes_pls_golite062009
    6
    Term Confidence Notes
  • binding
    		•  0.0980674097362609 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle