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Protein Overview: PPR45_ARATH

General Information:
Name(s) found: PPR45_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=3 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 866 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: RNA modification [IMP]
    chloroplast organization [IMP]
    response to light stimulus [IEP]
    growth [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSAQSPHF YLNPGKSNSF QSKAYKQRNV NFYWNFGIRR LFLRKSQGLS VLSSSSSSTH  60
   61 FSNSQLHGLC ANGKLEEAMK LLNSMQELRV AVDEDVFVAL VRLCEWKRAQ EEGSKVYSIA 120
  121 LSSMSSLGVE LGNAFLAMFV RFGNLVDAWY VFGKMSERNL FSWNVLVGGY AKQGYFDEAM 180
  181 CLYHRMLWVG GVKPDVYTFP CVLRTCGGIP DLARGKEVHV HVVRYGYELD IDVVNALITM 240
  241 YVKCGDVKSA RLLFDRMPRR DIISWNAMIS GYFENGMCHE GLELFFAMRG LSVDPDLMTL 300
  301 TSVISACELL GDRRLGRDIH AYVITTGFAV DISVCNSLTQ MYLNAGSWRE AEKLFSRMER 360
  361 KDIVSWTTMI SGYEYNFLPD KAIDTYRMMD QDSVKPDEIT VAAVLSACAT LGDLDTGVEL 420
  421 HKLAIKARLI SYVIVANNLI NMYSKCKCID KALDIFHNIP RKNVISWTSI IAGLRLNNRC 480
  481 FEALIFLRQM KMTLQPNAIT LTAALAACAR IGALMCGKEI HAHVLRTGVG LDDFLPNALL 540
  541 DMYVRCGRMN TAWSQFNSQK KDVTSWNILL TGYSERGQGS MVVELFDRMV KSRVRPDEIT 600
  601 FISLLCGCSK SQMVRQGLMY FSKMEDYGVT PNLKHYACVV DLLGRAGELQ EAHKFIQKMP 660
  661 VTPDPAVWGA LLNACRIHHK IDLGELSAQH IFELDKKSVG YYILLCNLYA DCGKWREVAK 720
  721 VRRMMKENGL TVDAGCSWVE VKGKVHAFLS DDKYHPQTKE INTVLEGFYE KMSEVGLTKI 780
  781 SESSSMDETE ISRDEIFCGH SERKAIAFGL INTVPGMPIW VTKNLSMCEN CHDTVKFISK 840
  841 TVRREISVRD AEHFHHFKDG ECSCGD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..492] PSI-BLAST 8.154902 No description for 2gw1A was found.
    2 View Details [493..777] PSI-BLAST 34.30103 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    3 View Details [778..866] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.77

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle