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Protein Overview: NHP2_ARATH

General Information:
Name(s) found: NHP2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8346555|emb|CAB93719.1| nhp2-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|68565941|sp|Q9LEY9.1|NOLA2_ARATH RecName: Full=H/ACA ribonucleoprotein complex subunit 2-like protein; AltName: Full=Nhp2-like protein [NCBI NR]
  • gi|15241537|ref|NP_196435.1| ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15215893|gb|AAK91490.1| AT5g08180/T22D6_120 [Arabidopsis thaliana] [NCBI NR]
  • gi|14190415|gb|AAK55688.1|AF378885_1 AT5g08180/T22D6_120 [Arabidopsis thaliana] [NCBI NR]
  • pir||T50503 nhp2-like protein - Arabidopsis thaliana [NCBI NR]
  • H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=2 SV=1 [Swiss-Prot]
  • H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1 [Swiss-Prot]
  • (Q9LEY9) Nhp2-like protein (AT5g08180/T22D6_120) [athaliana3702.FASTAC.txt]
  • nhp2-like protein [Arabidopsis thaliana]gi|15215893|gb|AAK91490.1| AT5g08180/T22D6_120 [Arabidopsis thaliana]gi|14190415|gb|AAK55688.1| AT5g08180/T22D6_120 [Arabidopsis thaliana]gi|11358578|pir||T50503 nhp2-like protein - Arabidopsis thalianagi|152415 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 H/ACA ribonucleoprotein complex subunit 2-like protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr5:2631844-2633375 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT5g08180/T22D6_120 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA binding / structural constituent of ribosome [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • H/ACA ribonucleoprotein complex subunit 2-like protein (Nhp2-like protein) [nr-271106-contam.fasta]
  • nhp2-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr5:2631843-2633374 REVERSE LENGTH=156 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 156 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [IDA]
    Biological Process: ribosome biogenesis [IEA]
    Molecular Function: RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSDTEAEKS IQKEKKKYAI TLAPIAKPLA GKKLQKRTFK LIQKAAGKKC LKRGVKEVVK  60
   61 SIRRGQKGLC VIAGNISPID VITHLPILCE EAGVPYVYVP SKEDLAQAGA TKRPTCCVLV 120
  121 MLKPAKGDLT AEELAKLKTD YEQVSDDIKE LATSVI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..156] PSI-BLAST 30.0 No description for 1zwzA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 5.75333813716704 bayes_pls_golite062009
  • RNA binding
    		•  5.39762744650785 bayes_pls_golite062009
  • snoRNA binding
    		•  4.95788328272916 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  3.68798692352408 bayes_pls_golite062009
  • structural molecule activity
    		•  3.12718364266877 bayes_pls_golite062009
  • mRNA binding
    		•  2.62944559104613 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.39301463005357 bayes_pls_golite062009
  • binding
    		•  2.34187530323842 bayes_pls_golite062009
  • protein binding
    		•  0.381324299701367 bayes_pls_golite062009
  • catalytic activity
    		•  0.264002643439785 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle