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Protein Overview: CDA2_ARATH

General Information:
Name(s) found: CDA2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|91806748|gb|ABE66101.1| cytidine deaminase/cytidine aminohydrolase [Arabidopsis thaliana] [NCBI NR]
  • pir||T09925 cytidine deaminase (EC 3.5.4.5) CDA2 - Arabidopsis thaliana [NCBI NR]
  • gi|7269861|emb|CAB79720.1| cytidine deaminase 2 (CDA2) [Arabidopsis thaliana] [NCBI NR]
  • gi|5123556|emb|CAB45322.1| cytidine deaminase 2 (CDA2) [Arabidopsis thaliana] [NCBI NR]
  • gi|4836447|gb|AAD30445.1|AF121877_5 DesE [Arabidopsis thaliana] [NCBI NR]
  • gi|3096908|emb|CAA06710.1| cytidine deaminase [Arabidopsis thaliana] [NCBI NR]
  • gi|15233628|ref|NP_194691.1| cytidine deaminase, putative / cytidine aminohydrolase, putative [Arabidopsis thaliana] [NCBI NR]
  • Cytidine deaminase 2 OS=Arabidopsis thaliana GN=CDA2 PE=2 SV=1 [Swiss-Prot]
  • (O65571) Cytidine deaminase (EC 3.5.4.5) (Cytidine deaminase 2) (CDA2) [athaliana3702.FASTAC.txt]
  • cytidine deaminase [Arabidopsis thaliana]gi|7269861|emb|CAB79720.1| cytidine deaminase 2 (CDA2) [Arabidopsis thaliana]gi|5123556|emb|CAB45322.1| cytidine deaminase 2 (CDA2) [Arabidopsis thaliana]gi|4836447|gb|AAD30445.1| DesE [Arabidopsis thaliana]gi| [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Cytidine deaminase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | cytidine deaminase, putative / cytidine aminohydrolase, putative | chr4:14519898-14520911 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • cytidine deaminase 2 (CDA2) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • cytidine deaminase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • cytidine deaminase/cytidine aminohydrolase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DesE [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • cytidine deaminase/ hydrolase/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr4:14519892-14520905 FORWARD LENGTH=337 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cytidine deaminase OS=Arabidopsis thaliana GN=cda2 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 337 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: cytidine metabolic process [IEA]
    cytidine deamination [ISS]
    Molecular Function: zinc ion binding [IEA]
    catalytic activity [IEA]
    cytidine deaminase activity [IEA][ISS]
    hydrolase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRPNLLSH LQDLVTKFKN MTMAQDRFKF VFTANEAALE GVTDPIRLPN LIRKAMCLAR  60
   61 APISKYKVGA VGRASSGRVY LGVNVDFPGL PLHHSIHAEQ FLVTNLALNY EKDLCKLAVA 120
  121 ISTDGLEFGT PCGNCLQFLM EMSNALDMKI LSKPKHEAGS FSSLRLLLPN VLPKGSPFLL 180
  181 EKRYNCLTLS GSAGEICSLD CSHLKRRALA AANNSFSPYT ESPSGVALLD NDGNWYRGWY 240
  241 IESVASNPSL GPVQAALVDF VARSRGKMFN KIVQAVLVEK NNASVSQERT AKIILDTIAP 300
  301 NCDFKVFHCS VDCAKRLKYL RETLVIDTLG DYTGLHY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..337] PSI-BLAST 68.69897 Two-domain cytidine deaminase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cytidine deaminase activity
    		•  4.23082821532341 bayes_pls_golite062009
  • deaminase activity
    		•  2.98296848979171 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
    		•  2.68002626337065 bayes_pls_golite062009
  • catalytic activity
    		•  2.07800438828306 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  1.99877479616498 bayes_pls_golite062009
  • phosphoribosylaminoimidazolecarboxamide formyltransferase activity
    		•  1.04494328925818 bayes_pls_golite062009
  • cyclohydrolase activity
    		•  0.76434031175481 bayes_pls_golite062009
  • hydroxymethyl-, formyl- and related transferase activity
    		•  0.65218322387102 bayes_pls_golite062009
  • IMP cyclohydrolase activity
    		•  0.49957918476182 bayes_pls_golite062009
  • glycine hydroxymethyltransferase activity
    		•  0.3349337641885 bayes_pls_golite062009
  • hydrolase activity
    		•  0.229082963211895 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle