YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CDA5_ARATH

General Information:
Name(s) found: CDA5_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • Cytidine deaminase 5 OS=Arabidopsis thaliana GN=CDA5 PE=3 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 346 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: cytidine metabolic process [IEA]
    cytidine deamination [ISS]
    Molecular Function: zinc ion binding [IEA]
    catalytic activity [IEA]
    cytidine deaminase activity [IEA][ISS]
    hydrolase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQYKFVFT AEQAASEGVT DHKKLPKLIR KARNLVKAPS KVGAVGRASS GRFYLGVNVE  60
   61 FKGLLPHFSI HAEQFLIANL ALNSEPKLTH LAVSDNGTVF QDPCYDCTRF LKEINNAHQI 120
  121 EILIKNAHGR DGSFKSLESH MPDEFGSESI LSAEPSLLLM ERDNCLALID EDSAAGGISS 180
  181 NADLCSFLKL EALKAANKSY APYRKCPSGV ALFCEGEVYA GWYIETVDRT ISLGPVQAAL 240
  241 VDFIARGEGK GFDKITGAVL VEKKDAKVGQ EDTARKLLEK IAAPNCDFKV FHCQEERKDW 300
  301 ITGAVLVEKK DAKEGQEGKL LEKIAAPNCD FKVSHCDEEL KDWIKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..346] PSI-BLAST 58.39794 Two-domain cytidine deaminase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cytidine deaminase activity
    		•  4.23082821532341 bayes_pls_golite062009
  • deaminase activity
    		•  2.98296848979171 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
    		•  2.68002626337065 bayes_pls_golite062009
  • catalytic activity
    		•  2.07800438828306 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  1.99877479616498 bayes_pls_golite062009
  • phosphoribosylaminoimidazolecarboxamide formyltransferase activity
    		•  1.04494328925818 bayes_pls_golite062009
  • cyclohydrolase activity
    		•  0.76434031175481 bayes_pls_golite062009
  • hydroxymethyl-, formyl- and related transferase activity
    		•  0.65218322387102 bayes_pls_golite062009
  • IMP cyclohydrolase activity
    		•  0.49957918476182 bayes_pls_golite062009
  • glycine hydroxymethyltransferase activity
    		•  0.3349337641885 bayes_pls_golite062009
  • hydrolase activity
    		•  0.229082963211895 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle