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Protein Overview: gi|225897930, gi...

General Information:
Name(s) found: gi|4966369 [NCBI NR]
gi|25294103 [NCBI NR]
gi|225897930 [NCBI NR]
gi|15219259 [NCBI NR]
Description(s) found:
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  • gi|4966369|gb|AAD34700.1|AC006341_28 Similar to gb|Y11352 myb factor from Oryza sativa. [Arabidopsis thaliana] [NCBI NR]
  • pir||D86300 hypothetical protein F3O9.29[imported] - Arabidopsis thaliana [NCBI NR]
  • gi|225897930|dbj|BAH30297.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15219259|ref|NP_173098.1| MYB58 (MYB DOMAIN PROTEIN 58); DNA binding / transcription activator/ transcription factor [Arabidopsis thaliana] [NCBI NR]
  • (Q9SA47) F3O9.29 protein [athaliana3702.FASTAC.txt]
  • Similar to gb|Y11352 myb factor from Oryza sativa. [Arabidopsis thaliana]gi|15219259|ref|NP_173098.1| myb family transcription factor (MYB58) [Arabidopsis thaliana]gi|25294103|pir||D86300 hypothetical protein F3O9.29[imported] - Arabidopsis thaliana [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Myb family transcription factor (MYB58) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: AtMYB58 | AtMYB58 (myb domain protein 58); DNA binding / transcription factor | chr1:5629852-5630837 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Similar to gb|Y11352 myb factor from Oryza sativa. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATMYB58, MYB58 | myb domain protein 58 | chr1:5629859-5630844 REVERSE LENGTH=274 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F3O9.29 protein OS=Arabidopsis thaliana GN=F3O9.29 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 274 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: lignin biosynthetic process [IMP]
    regulation of transcription, DNA-dependent [ISS]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]
    transcription activator activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGRAPCCD KTKVKRGPWS HDEDLKLISF IHKNGHENWR SLPKQAGLLR CGKSCRLRWI  60
   61 NYLRPDVKRG NFSAEEEDTI IKLHQSFGNK WSKIASKLPG RTDNEIKNVW HTHLKKRLSS 120
  121 ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT 180
  181 GMLQEVDKPE LLEMPFDLDP DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG 240
  241 LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..165] PSI-BLAST 31.69897 c-Myb, DNA-binding domain
    2 View Details [166..274] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle