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Protein Overview: CTF64_ARATH

General Information:
Name(s) found: CTF64_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7239507|gb|AAF43233.1|AC012654_17 Contains similarity to the polyadenylation factor 64 kDa subunit from Xenopus laevis gb|U17394; It contains RNA recognition motif PF|00076. ESTs gb|AI993960 and T42211 come from this gene. [Arabidopsis thaliana] [NCBI NR]
  • pir||E96740 hypothetical protein F14O23.18 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|22330574|ref|NP_177325.2| cleavage stimulation factor, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|110738120|dbj|BAF00992.1| cleavage stimulation factor like protein [Arabidopsis thaliana] [NCBI NR]
  • Cleavage stimulating factor 64 OS=Arabidopsis thaliana GN=CSTF64 PE=1 SV=1 [Swiss-Prot]
  • (Q9M9G6) F14O23.18 protein [athaliana3702.FASTAC.txt]
  • Contains similarity to the polyadenylation factor 64 kDa subunit from Xenopus laevis gb|U17394; It contains RNA recognition motif PF|00076. ESTs gb|AI993960 and T42211 come from this gene. [Arabidopsis thaliana]gi|25406120|pir||E96740 hypothetical prote [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Cleavage stimulation factor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | cleavage stimulation factor, putative | chr1:27003268-27005512 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA binding / nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Contains similarity to the polyadenylation factor 64 kDa subunit from Xenopus laevis gb|U17394; It contains RNA recognition motif PF|00076. ESTs gb|AI993960 and T42211 come from this gene. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • cleavage stimulation factor like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: CSTF64 | cleavage stimulating factor 64 | chr1:26999606-27001850 FORWARD LENGTH=461 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cleavage stimulating factor 64 OS=Arabidopsis thaliana GN=F14O23.18 PE=1 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 461 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: RNA 3'-end processing [IMP]
    developmental growth [IMP]
    Molecular Function: RNA binding [ISS]
    protein binding [IPI]
    mRNA binding [IDA]
    transcription repressor activity [IMP]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE  60
   61 ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG GPGLPSTTTV TESQKQIGGP 120
  121 VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT 180
  181 EIISSIKLMA TQNKEHARQL LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG 240
  241 SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP 300
  301 PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS 360
  361 LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN SMLPNQAQAP QTHISPDVQS 420
  421 TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] PSI-BLAST 24.0 NMR Structure of the N-terminal RRM domain of Cleavage stimulation factor 64 KDa subunit
    2 View Details [92..266] deduced N/A No confident structure predictions are available.
    3 View Details [267..461] PSI-BLAST 11.0 poly(A) binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.86761524461453 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.984778969024386 bayes_pls_golite062009
  • protein binding
    		•  0.426607329742248 bayes_pls_golite062009
  • RNA binding
    		•  0.0622892880461364 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.985281368149008 bayes_pls_golite062009
  • protein binding
    		•  0.160528696920916 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.55

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle