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Protein Overview: U2AFA_ARATH

General Information:
Name(s) found: U2AFA_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75336807|sp|Q9S709.1|U2AFA_ARATH RecName: Full=Splicing factor U2af small subunit A; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor small subunit A; Short=U2 snRNP auxiliary factor small subunit A; AltName: Full=U2 auxiliary factor 3 [NCBI NR]
  • gi|6693017|gb|AAF24943.1|AC012375_6 T22C5.10 [Arabidopsis thaliana] [NCBI NR]
  • gi|5668775|gb|AAD46002.1|AC005916_14 Strong similarity to gb|Y18349 U2 snRNP auxiliary factor, small subunit from Oryza sativa. ESTs gb|AA586295 and gb|AA597332 come from this gene. [Arabidopsis thaliana] [NCBI NR]
  • gi|21689611|gb|AAM67427.1| At1g27650/T22C5_2 [Arabidopsis thaliana] [NCBI NR]
  • gi|21595106|gb|AAM66073.1| putative U2 snRNP auxiliary factor [Arabidopsis thaliana] [NCBI NR]
  • gi|20465943|gb|AAM20157.1| putative U2 snRNP auxiliary factor protein [Arabidopsis thaliana] [NCBI NR]
  • gi|19699275|gb|AAL91249.1| At1g27650/T22C5_2 [Arabidopsis thaliana] [NCBI NR]
  • gi|17528936|gb|AAL38678.1| putative U2 snRNP auxiliary factor [Arabidopsis thaliana] [NCBI NR]
  • gi|15217666|ref|NP_174086.1| ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • gi|12744991|gb|AAK06875.1|AF344324_1 putative U2 snRNP auxiliary factor [Arabidopsis thaliana] [NCBI NR]
  • Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1 [Swiss-Prot]
  • (Q9S709) T22C5.10 (Putative U2 snRNP auxiliary factor protein) (At1g27650/T22C5_2) [athaliana3702.FASTAC.txt]
  • putative U2 snRNP auxiliary factor [Arabidopsis thaliana]gi|12744991|gb|AAK06875.1| putative U2 snRNP auxiliary factor [Arabidopsis thaliana]gi|20465943|gb|AAM20157.1| putative U2 snRNP auxiliary factor protein [Arabidopsis thaliana]gi|17528936|gb|AAL3 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 U2 snRNP auxiliary factor small subunit [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATU2AF35A | ATU2AF35A; RNA binding | chr1:9615139-9616029 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g27650/T22C5_2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative U2 snRNP auxiliary factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative U2 snRNP auxiliary factor protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • T22C5.10 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Strong similarity to gb|Y18349 U2 snRNP auxiliary factor, small subunit from Oryza sativa. ESTs gb|AA586295 and gb|AA597332 come from this gene. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA binding / nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small subunit, putative | chr1:9615152-9616042 FORWARD LENGTH=296 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 296 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: photoperiodism, flowering [IMP]
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    zinc ion binding [IEA]
    RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP  60
   61 GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI CDNLADHMIG NVYVQFKEED 120
  121 QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL 180
  181 RRKLFGRYRR SYRRGSRSRS RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR 240
  241 SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..157] PSI-BLAST 17.0 U2AF35 (35 KDa subunit)
    2 View Details [158..296] PSI-BLAST 3.69897 No description for 2o3dA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle