YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: U2AFA_ARATH

General Information:
Name(s) found: U2AFA_ARATH [Swiss-Prot]
Description(s) found:
Found 23 descriptions.
SHOW ALL
  • Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 296 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: photoperiodism, flowering [IMP]
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    zinc ion binding [IEA]
    RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP  60
   61 GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI CDNLADHMIG NVYVQFKEED 120
  121 QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL 180
  181 RRKLFGRYRR SYRRGSRSRS RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR 240
  241 SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..157] PSI-BLAST 17.0 U2AF35 (35 KDa subunit)
    2 View Details [158..296] PSI-BLAST 3.69897 No description for 2o3dA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle