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Protein Overview: GDPD1_ARATH

General Information:
Name(s) found: GDPD1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|6513927|gb|AAF14831.1|AC011664_13 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21280829|gb|AAM45121.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18396047|ref|NP_566159.1| SRG3 (senescence-related gene 3); glycerophosphodiester phosphodiesterase/ phosphoric diester hydrolase [Arabidopsis thaliana] [NCBI NR]
  • gi|18175909|gb|AAL59949.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • Glycerophosphodiester phosphodiesterase GDPD1, chloroplastic OS=Arabidopsis thaliana GN=GDPD1 PE=1 SV=1 [Swiss-Prot]
  • (Q9SGA2) F1C9.18 protein (Hypothetical protein) [athaliana3702.FASTAC.txt]
  • hypothetical protein [Arabidopsis thaliana]gi|21280829|gb|AAM45121.1| unknown protein [Arabidopsis thaliana]gi|18175909|gb|AAL59949.1| unknown protein [Arabidopsis thaliana]gi|18396047|ref|NP_566159.1| glycerophosphoryl diester phosphodiesterase family [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycerophosphoryl diester phosphodiesterase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SRG3 | SRG3 (SENESCENCE-RELATED GENE 3); glycerophosphodiester phosphodiesterase | chr3:348512-349916 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • SRG3 (SENESCENCE-RELATED GENE 3); glycerophosphodiester phosphodiesterase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SRG3 | senescence-related gene 3 | chr3:348505-349909 REVERSE LENGTH=361 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F1C9.18 protein OS=Arabidopsis thaliana GN=F1C9.18 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 361 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: glycerol metabolic process [IEA][ISS]
    lipid metabolic process [IEA]
    Molecular Function: glycerophosphodiester phosphodiesterase activity [IEA][ISS]
    phosphoric diester hydrolase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKAIHVSE VPSLDHFPEN PSLICSSRKA NNKFVVVGHR GHGMNMSQSP DLRFSALKEN  60
   61 SILSFNAASK FPLDFIEFDV QVTRDGCPII FHDDFIYSEE QGVVYEKRVT EVCLSEFMSY 120
  121 GPQRDTGKTG KPLLRKSKEG KIHKWSVATD DSFCTLQEAF EKVENPNLGF NIELKLDDNV 180
  181 FYSSDHLSRL LLPILQVVSD IGNDRTIIFS SFHPDAALLV RKLQTTYPVF FLTNGGTEMY 240
  241 HDTRRNSLEE AIKVCLEGGL QGIVSEVKGV FRNPALVNKI KESKLSLMTY GKLNNVAEAV 300
  301 YMQHLMGIEG VIVDHVEEIT EAVREMMKPS NRDADGTKPK PNFSDRELSF LLKLIPELIQ 360
  361 H

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..361] PSI-BLAST 54.045757 Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.693222330136336 bayes_pls_golite062009
  • hydrolase activity
    		•  0.17768980721334 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.05056572092175 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  0.0304825793447705 bayes_pls_golite062009
  • phosphoric diester hydrolase activity
    		•  0.01534375493934 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle