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Protein Overview: gi|4204272, gi|2...

General Information:
Name(s) found: gi|4204272 [NCBI NR]
gi|25405831 [NCBI NR]
gi|18405372 [NCBI NR]
Description(s) found:
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  • gi|4204272|gb|AAD10653.1| Hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • pir||E96596 hypothetical protein T5A14.16 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|18405372|ref|NP_564688.1| EDA11 (embryo sac development arrest 11); protein binding / zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • (Q9ZVU2) T5A14.16 protein [athaliana3702.FASTAC.txt]
  • Hypothetical protein [Arabidopsis thaliana]gi|25405831|pir||E96596 hypothetical protein T5A14.16 [imported] - Arabidopsis thalianagi|18405372|ref|NP_564688.1| DC1 domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DC1 domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: EDA11 | EDA11 (embryo sac development arrest 11); protein binding / zinc ion binding | chr1:20695441-20697618 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: EDA11 | Cysteine/Histidine-rich C1 domain family protein | chr1:20691775-20693952 REVERSE LENGTH=725 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cysteine/histidine-rich C1 domain-containing protein OS=Arabidopsis thaliana GN=T5A14.16 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 725 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: megagametogenesis [IMP]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPPPPHFSR AKPPCRLSDP AQPHKLCRRR RPSYPPLSIC FTCKGKQLRS SAYYYYCATC  60
   61 NLEFHRGCHI FLPVIRSSFH PSHPLTFFSS DPKFDVSIIP KYWRDSSATE ESSDESINQL 120
  121 TIEYLGDVSD DDGEDSHSDH DLGASEDDGE DSHSDHDLGA SDDDGEDSHS DHDLGARDDD 180
  181 GNGNGAGDVH ADGEASLSDG NHLKCKCCGV PLQMTYYHCS ICKFNLNLDC SMRQPPPIIS 240
  241 HLKSHEHTLT LFPIRLPLPC DACGLSLNDT EDLVYSCLPC SRMVHRSCIY LPRVIKITRH 300
  301 QHRLSHTSSL QPGDFSCGVC RQTVDVNYGQ YSCNKECHYA VHSKCATRND VWDGKDLDGV 360
  361 PEEPDEFIEP PFLKIDEETI QHFSHHHYLK LHEKKTIYKR DKFCEACTLP VMISQRFYGC 420
  421 MQCDFVLDET CASLPRKKNH PLHKHPLNLH TLPLGESAMI NKGATSKDIF KCIGCGRIGC 480
  481 GFYYKCDEKN CDEFLLDVRC ASLPDPFVHD CHPHDHPLFF NLTKGNCMGC GSDSCSSYFL 540
  541 ECIKCKSFLG IKCATLPCEA HYTHDRHPLT LCYEEEEDTT SGQYWCEICE FKLDPKTWFY 600
  601 TCDYCMITLH VNCLLGKDIY LKPCHIFKVG LFYKEVEIAR NDGNSRLFCY ICRLRCGQTL 660
  661 VFKWLGRRKS FCTLRCIGKY VKDTRGYYDA VAMGYFESYP TNLVTSPEAS DSSVIKSAFD 720
  721 FLFRD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..124] FFAS03 2.68 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    2 View Details [125..240] PSI-BLAST 5.69897 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    3 View Details [241..297] PSI-BLAST 4.522879 NMR STRUCTURE OF A PROTEIN KINASE C-G PHORBOL-BINDING DOMAIN, MINIMIZED AVERAGE STRUCTURE
    4 View Details [298..498] deduced N/A No confident structure predictions are available.
    5 View Details [499..614] FFAS03 2.31 Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
    6 View Details [615..725] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle