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Protein Overview: WRK42_ARATH

General Information:
Name(s) found: WRK42_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|91806634|gb|ABE66044.1| WRKY family transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|7267202|emb|CAB77913.1| putative DNA-binding protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4773884|gb|AAD29757.1|AF076243_4 putative DNA-binding protein [Arabidopsis thaliana] [NCBI NR]
  • pir||C85056 probable DNA-binding protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|225898767|dbj|BAH30514.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20978795|sp|Q9XEC3.1|WRK42_ARATH RecName: Full=Probable WRKY transcription factor 42; AltName: Full=WRKY DNA-binding protein 42 [NCBI NR]
  • gi|15990594|gb|AAL11011.1| WRKY transcription factor 42 [Arabidopsis thaliana] [NCBI NR]
  • gi|15233516|ref|NP_192354.1| WRKY42; transcription factor [Arabidopsis thaliana] [NCBI NR]
  • Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1 [Swiss-Prot]
  • (Q9XEC3) Probable WRKY transcription factor 42 (WRKY DNA-binding protein 42) [Swiss-Prot]
  • putative DNA-binding protein [Arabidopsis thaliana]gi|15990594|gb|AAL11011.1| WRKY transcription factor 42 [Arabidopsis thaliana]gi|20978795|sp|Q9XEC3|WR42_ARATH Probable WRKY transcription factor 42 (WRKY DNA-binding protein 42)gi|4773884|gb|AAD29757. [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Probable WRKY transcription factor 42 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATWRKY42, WRKY42 | WRKY42 (WRKY DNA-binding protein 42); transcription factor | chr4:2218377-2221111 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • WRKY transcription factor 42 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • WRKY family transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • WRKY42; transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative DNA-binding protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Probable WRKY transcription factor 42 (WRKY DNA-binding protein 42) [nr-271106-contam.fasta]
  • | Symbols: WRKY42, AtWRKY42 | WRKY family transcription factor | chr4:2218379-2221113 FORWARD LENGTH=528 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 528 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: negative regulation of transcription [IMP]
    regulation of transcription, DNA-dependent [ISS]
    Molecular Function: transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRFPVSLGG GPRENLKPSD EQHQRAVVNE VDFFRSAEKR DRVSREEQNI IADETHRVHV  60
   61 KRENSRVDDH DDRSTDHINI GLNLLTANTG SDESMVDDGL SVDMEEKRTK CENAQLREEL 120
  121 KKASEDNQRL KQMLSQTTNN FNSLQMQLVA VMRQQEDHHH LATTENNDNV KNRHEVPEMV 180
  181 PRQFIDLGPH SDEVSSEERT TVRSGSPPSL LEKSSSRQNG KRVLVREESP ETESNGWRNP 240
  241 NKVPKHHASS SICGGNGSEN ASSKVIEQAA AEATMRKARV SVRARSEAPM LSDGCQWRKY 300
  301 GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMNMAS 360
  361 TTTAAASMLL SGSTMSNQDG LMNPTNLLAR TILPCSSSMA TISASAPFPT ITLDLTESPN 420
  421 GNNPTNNPLM QFSQRSGLVE LNQSVLPHMM GQALYYNQQS KFSGLHMPSQ PLNAGESVSA 480
  481 ATAAIASNPN FAAALAAAIT SIINGSNNQQ NGNNNNSNVT TSNVDNRQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..100] deduced N/A No confident structure predictions are available.
    2 View Details [101..155] FFAS03 1.12 C/ebp beta
    3 View Details [156..252] deduced N/A No confident structure predictions are available.
    4 View Details [253..351] PSI-BLAST 25.522879 Solution Structure of the C-terminal WRKY Domain of AtWRKY4
    5 View Details [352..528] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle