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Protein Overview: SYNC1_ARATH

General Information:
Name(s) found: SYNC1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|5670315|gb|AAD46681.1|AF170909_1 SYNC1 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20140329|sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 [NCBI NR]
  • gi|15241897|ref|NP_200479.1| SYNC1; ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding [Arabidopsis thaliana] [NCBI NR]
  • gi|133778862|gb|ABO38771.1| At5g56680 [Arabidopsis thaliana] [NCBI NR]
  • gi|10176772|dbj|BAB09886.1| SYNC1 protein [Arabidopsis thaliana] [NCBI NR]
  • Asparagine--tRNA ligase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=1 SV=1 [Swiss-Prot]
  • (Q9SW96) Asparaginyl-tRNA synthetase, cytoplasmic 1 (EC 6.1.1.22) (Asparagine--tRNA ligase 1) (AsnRS 1) [Swiss-Prot]
  • SYNC1 protein [Arabidopsis thaliana]gi|15241897|ref|NP_200479.1| asparaginyl-tRNA synthetase 1, cytoplasmic / asparagine-tRNA ligase 1 (SYNC1) [Arabidopsis thaliana]gi|20140329|sp|Q9SW96|SYN1_ARATH Asparaginyl-tRNA synthetase, cytoplasmic 1 (Asparagine- [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Asparaginyl-tRNA synthetase, cytoplasmic 1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: EMB2755, SYNC1 | SYNC1 (EMBRYO DEFECTIVE 2755); ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / nucleotide binding | chr5:22953871-22956067 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • SYNC1 protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • EMB2755; ATP binding / asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / tRNA ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Asparaginyl-tRNA synthetase, cytoplasmic 1 (Asparagine--tRNA ligase 1) (AsnRS 1) [nr-271106-contam.fasta]
  • | Symbols: SYNC1, EMB2755, SYNC1 ARATH | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr5:22936645-22938841 FORWARD LENGTH=572 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Asparagine--tRNA ligase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 572 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    mitochondrion [IDA]
    Biological Process: embryonic development ending in seed dormancy [IMP][NAS]
    response to cadmium ion [IEP]
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    ATP binding [IEA]
    aminoacyl-tRNA ligase activity [IEA]
    asparagine-tRNA ligase activity [IEA]
    aspartate-tRNA ligase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEIVPPAT QLAAVSLEND GSTVQRAQFS NRVLIRTILD RPDGGAGLAG QTVRIGGWVK  60
   61 SGRDQGKRTF SFLAVNDGSC PANLQVMVDP SLYDVSNLVA TGTCVTVDGV LKVPPKGKGT 120
  121 QQQIELNVVK VIDVGTVDAS KYPLPKTKLT LETLRDVLHL RSRTNSISAV ARIRNALAFA 180
  181 THSFFQEHSF LYIHTPIITT SDCEGAGEMF QATTLINYTE RLEQDLIDNP PPTEADVEAA 240
  241 RLIVIERGNV VAELKAAKAS KEAITAAVAE LKIAKETFAH IDERSRLRPG LPKKDGNIDY 300
  301 SKDFFGRQAF LTVSGQLQVE TYACALSNVY TFGPTFRAEN SHTSRHLAEF WMVEPEIAFA 360
  361 DLEDDMNCAE AYVKYMCNWL LEKCYADMEL MAKNFDSGCI DRLKLVASTP FGRITYTKAI 420
  421 ELLEEAVAKG KEFDNNVEWG IDLASEHERY LTEVLFQKPL IVYNYPKGIK AFYMRLNDDE 480
  481 KTVAAMDVLV PKVGELIGGS QREERYDVIK KRIEEMGLPI EPYEWYLDLR RYGTVKHCGF 540
  541 GLGFERMILF ATGLDNIRDV IPFPRYPGKA DL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..572] PSI-BLAST 145.0 Aspartyl-tRNA synthetase (AspRS); Prokaryotic AspRS, insert domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle