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Protein Overview: SVP_ARATH

General Information:
Name(s) found: SVP_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30681743|ref|NP_179840.2| SVP (SHORT VEGETATIVE PHASE); transcription factor/ translation repressor, nucleic acid binding [Arabidopsis thaliana] [NCBI NR]
  • gi|193083241|gb|ACF09414.1| At2g22540 [Arabidopsis thaliana] [NCBI NR]
  • gi|17433186|sp|Q9FVC1.1|SVP_ARATH RecName: Full=MADS-box protein SVP; AltName: Full=Protein SHORT VEGETATIVE PHASE [NCBI NR]
  • gi|156778053|gb|ABU95408.1| short vegetative phase [Arabidopsis thaliana] [NCBI NR]
  • gi|10944320|gb|AAG24508.1|AF211171_1 short vegetative phase protein [Arabidopsis thaliana] [NCBI NR]
  • MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1 [Swiss-Prot]
  • (Q9FVC1) SHORT VEGETATIVE PHASE protein [athaliana3702.FASTAC.txt]
  • short vegetative phase protein [Arabidopsis thaliana]gi|30681743|ref|NP_179840.2| short vegetative phase protein (SVP) [Arabidopsis thaliana]gi|17433186|sp|Q9FVC1|SVP_ARATH SHORT VEGETATIVE PHASE protein [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Splice Isoform Long of SHORT VEGETATIVE PHASE protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: AGL22, SVP | SVP (SHORT VEGETATIVE PHASE); transcription factor | chr2:9587497-9590683 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • SVP (SHORT VEGETATIVE PHASE); transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Protein SHORT VEGETATIVE PHASE [nr-271106-contam.fasta]
  • short vegetative phase protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SVP, AGL22 | K-box region and MADS-box transcription factor family protein | chr2:9580417-9583603 FORWARD LENGTH=240 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 240 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: maintenance of floral meristem identity [IGI]
    floral meristem determinacy [IGI]
    response to temperature stimulus [IMP]
    negative regulation of transcription [IDA]
    floral whorl development [IGI]
    negative regulation of flower development [IMP]
    Molecular Function: transcription factor activity [ISS][TAS]
    translation repressor activity, nucleic acid binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS  60
   61 SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE IADKSHRLRQ MRGEELQGLD 120
  121 IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER 180
  181 LGMQICNNVH AHGGAESENA AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG 240
  241

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..83] PSI-BLAST 18.221849 Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2
    2 View Details [84..240] Pfam 6.004365 No description for PF01486.8 was found. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.0368771990474 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle