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Protein Overview: RR4_ARATH

General Information:
Name(s) found: RR4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7525035|ref|NP_051061.1| ribosomal protein S4 [Arabidopsis thaliana] [NCBI NR]
  • gi|6685914|sp|P56799.1|RR4_ARATH RecName: Full=30S ribosomal protein S4, chloroplastic [NCBI NR]
  • gi|5881696|dbj|BAA84387.1| ribosomal protein S4 [Arabidopsis thaliana] [NCBI NR]
  • 30S ribosomal protein S4, chloroplastic OS=Arabidopsis thaliana GN=rps4 PE=3 SV=1 [Swiss-Prot]
  • (P56799) Chloroplast 30S ribosomal protein S4 [athaliana3702.FASTAC.txt]
  • ribosomal protein S4 [Arabidopsis thaliana]gi|7525035|ref|NP_051061.1| ribosomal protein S4 [Arabidopsis thaliana]gi|6685914|sp|P56799|RR4_ARATH Chloroplast 30S ribosomal protein S4 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Chloroplast 30S ribosomal protein S4 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: RPS4 | Chloroplast encoded ribosomal protein S4 | chrC:45223-45828 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ribosomal protein S4 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Chloroplast 30S ribosomal protein S4 [nr-271106-contam.fasta]
  • | Symbols: RPS4 | chloroplast ribosomal protein S4 | chrC:45223-45828 REVERSE LENGTH=201 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 201 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRYRGPRFK KIRRLGALPG LTSKRPKAGS DLRNQSRSVK KSQYRIRLEE KQKLRFHYGL  60
   61 TEHQLLKYVR IAGKAKGSTG QVLLQLLEMR LDNILFRLGM ALTIPQARQL VNHGHILVNG 120
  121 RIVDIPSYRC KPRDIITVKD EQNSRTLVQN LLDSSAPEEL PNHLTLHTFQ YEGLVNQIID 180
  181 RKCVGLKINE LLVVEYYSRQ T

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..201] PSI-BLAST 66.09691 No description for 1vs5D was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.39690558966302 bayes_pls_golite062009
  • structural molecule activity
    		•  8.82127733244958 bayes_pls_golite062009
  • RNA binding
    		•  1.78858120096157 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.46320109129014 bayes_pls_golite062009
  • binding
    		•  1.39612080445111 bayes_pls_golite062009
  • protein binding
    		•  0.355025246110141 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.51

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle