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Protein Overview: RPD3B_ARATH

General Information:
Name(s) found: RPD3B_ARATH [Swiss-Prot]
Description(s) found:
Found 18 descriptions.
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  • DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD3B PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 319 amino acids

    Gene Ontology:
    Cellular Component: DNA-directed RNA polymerase V complex [IPI]
    DNA-directed RNA polymerase II, core complex [IPI]
    Biological Process: transcription [IEA][ISS]
    Molecular Function: DNA binding [IEA][ISS]
    DNA-directed RNA polymerase activity [IEA][ISS]
    protein dimerization activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGVTYQRFP TVKIRELKDD YAKFELRETD VSMANALRRV MISEVPTMAI HLVKIEVNSS  60
   61 VLNDEFIAQR LSLIPLTSER AMSMRFCQDC EDCNGDEHCE FCSVEFPLSA KCVTDQTLDV 120
  121 TSRDLYSADP TVTPVDFTSN SSTSDSSEHK GIIIAKLRRG QELKLKALAR KGIGKDHAKW 180
  181 SPAATVTYMY EPDIIINEEM MNTLTDEEKI DLIESSPTKV FGIDPVTGQV VVVDPEAYTY 240
  241 DEEVIKKAEA MGKPGLIEIH PKHDSFVFTV ESTGALKASQ LVLNAIDILK QKLDAIRLSD 300
  301 NTVEADDQFG ELGAHMREG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..319] PSI-BLAST 53.39794 RPB3


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle