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Protein Overview: PDX11_ARATH

General Information:
Name(s) found: PDX11_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||T01255 probable ethylene-inducible protein F16M14.16 - Arabidopsis thaliana [NCBI NR]
  • gi|45477177|sp|O80448.1|PDX11_ARATH RecName: Full=Pyridoxal biosynthesis protein PDX1.1; AltName: Full=HEVER-like protein; Short=AtPDX1.1; Short=AtPDX1;2 [NCBI NR]
  • gi|3335371|gb|AAC27172.1| similar to SOR1 from the fungus Cercospora nicotianae [Arabidopsis thaliana] [NCBI NR]
  • gi|17104657|gb|AAL34217.1| putative SOR1 from the fungus Cercospora nicotianae protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15224470|ref|NP_181358.1| ATPDX1.1 (pyridoxine biosynthesis 1.1); protein heterodimerization [Arabidopsis thaliana] [NCBI NR]
  • gi|14326483|gb|AAK60287.1|AF385694_1 At2g38230/F16M14.16 [Arabidopsis thaliana] [NCBI NR]
  • gi|13878067|gb|AAK44111.1|AF370296_1 putative SOR1 from the fungus Cercospora nicotianae protein [Arabidopsis thaliana] [NCBI NR]
  • (O80448) Probable pyridoxin biosynthesis PDX1-like protein 1 (HEVER-like protein) [Swiss-Prot]
  • Pyridoxal 5'-phosphate synthase subunit PDX1.1 OS=Arabidopsis thaliana GN=PDX11 PE=1 SV=1 [Swiss-Prot]
  • putative SOR1 from the fungus Cercospora nicotianae protein [Arabidopsis thaliana]gi|13878067|gb|AAK44111.1| putative SOR1 from the fungus Cercospora nicotianae protein [Arabidopsis thaliana]gi|3335371|gb|AAC27172.1| similar to SOR1 from the fungus Cerc [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Probable pyridoxin biosynthesis PDX1-like protein 1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATPDX1.1 | ATPDX1.1 (PYRIDOXINE BIOSYNTHESIS 1.1); protein heterodimerization | chr2:16018553-16019482 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative SOR1 from the fungus Cercospora nicotianae protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • similar to SOR1 from the fungus Cercospora nicotianae [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At2g38230/F16M14.16 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Probable pyridoxin biosynthesis PDX1-like protein 1 (HEVER-like protein) [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATPDX1.1, PDX1.1 | pyridoxine biosynthesis 1.1 | chr2:16011475-16012404 FORWARD LENGTH=309 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Pyridoxal biosynthesis protein PDX1.1 OS=Arabidopsis thaliana GN=PDX11 PE=1 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 309 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    cytosol [IDA]
    Biological Process: vitamin B6 biosynthetic process [IGI]
    Molecular Function: protein heterodimerization activity [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGTGVVAVY GEGAMTETKQ KSPFSVKVGL AQMLRGGVIM DVVNAEQARI AEEAGACAVM  60
   61 ALERVPADIR AQGGVARMSD PEMIKEIKNA VTIPVMAKAR IGHFVEAQIL EAIGVDYVDE 120
  121 SEVLTLADED NHINKHNFKI PFVCGCRNLG EALRRIREGA AMIRTKGEAG TGNVVEAVRH 180
  181 VRSVNGAIRL LRSMDDDEVF TYAKKIAAPY DLVVQTKELG RLPVVQFAAG GVATPADAAL 240
  241 MMQLGCDGVF VGSGVFKSGD PVKRAKAIVQ AVTNYRDAAV LAEVSCGLGE AMVGLNLDDK 300
  301 VERFASRSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..309] PSI-BLAST 116.0 Structure of the synthase subunit of PLP synthase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.44231061702877 bayes_pls_golite062009
  • ribulose-phosphate 3-epimerase activity
    		•  1.56591581078504 bayes_pls_golite062009
  • binding
    		•  0.283052085721618 bayes_pls_golite062009
  • racemase and epimerase activity, acting on carbohydrates and derivatives
    		•  0.21095259308705 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle