YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PLY6_ARATH

General Information:
Name(s) found: PLY6_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|7449064|pir||T00856 pectate lyase (EC 4.2.2.2) T20F6.14 - Arabidopsis thaliana [NCBI NR]
  • gi|54606856|gb|AAV34776.1| At2g02720 [Arabidopsis thaliana] [NCBI NR]
  • gi|32129832|sp|O64510.1|PEL6_ARATH RecName: Full=Probable pectate lyase 6; Flags: Precursor [NCBI NR]
  • gi|2947069|gb|AAC05350.1| putative pectate lyase [Arabidopsis thaliana] [NCBI NR]
  • gi|28973690|gb|AAO64162.1| putative pectate lyase [Arabidopsis thaliana] [NCBI NR]
  • gi|15227026|ref|NP_178375.1| pectate lyase family protein [Arabidopsis thaliana] [NCBI NR]
  • Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1 [Swiss-Prot]
  • (O64510) Probable pectate lyase 6 precursor (EC 4.2.2.2) [athaliana3702.FASTAC.txt]
  • At2g02720 [Arabidopsis thaliana]gi|28973690|gb|AAO64162.1| putative pectate lyase [Arabidopsis thaliana]gi|2947069|gb|AAC05350.1| putative pectate lyase [Arabidopsis thaliana]gi|32129832|sp|O64510|PEL6_ARATH Probable pectate lyase 6 precursorgi|744906 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Probable pectate lyase 6 precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | pectate lyase family protein | chr2:763172-764833 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative pectate lyase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Probable pectate lyase 6 precursor [nr-271106-contam.fasta]
  • At2g02720 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • pectate lyase (EC 4.2.2.2) T20F6.14 - Arabidopsis thaliana [nr-271106-contam.fasta]
  • lyase/ pectate lyase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectate lyase family protein | chr2:763173-764834 FORWARD LENGTH=455 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 455 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: pectate lyase activity [ISS]
    lyase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNLGSYVFV FVALSLTVVV PSVQAHIAEY DEYWTQRQTN ALRETLESYD PNPENVTDHF  60
   61 NYHAALAMET TGIVNETRRD LRQVGRGKKT TRRGGRFESL NAIDKCWRGD KNWDKNRKKL 120
  121 ADCVLGFGRK TTGGKNGPIY VVTDPSDNDL LKPKPGTIRH AVTRDRPLWI IFARSMIIKL 180
  181 QQELIITNDK TIDGRGAKIY ITGGAGLTLQ FVRNVIIHNI HIKQIKRGAG GLIIDSEQHF 240
  241 GLRTVSDGDG INIFGATNVW IDHVSMTDCS DGMIDAIMGS TAITISNSHF TDHDEVMLFG 300
  301 GTNKDVIDKK MQITVAFNHF GKRLKQRMPR VRFGLVHVVN NDYTHWEMYA IGGNMNPTII 360
  361 SQGNRFIAPP IEDSKQVTKR EYTPYPEWKS WNWQSEKDYF LNGAYFVQSG KANAWSATPK 420
  421 NPIPRKFAIR PQPGTKVRRL TKDAGTLGCK PGKSC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] Pfam 32.769551 No description for PF04431.4 was found. No confident structure predictions are available.
    2 View Details [89..455] PSI-BLAST 69.221849 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.142826098671881 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle