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Protein Overview: PLY5_ARATH

General Information:
Name(s) found: PLY5_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|32129846|sp|Q9FXD8.2|PEL5_ARATH RecName: Full=Probable pectate lyase 5; Flags: Precursor [NCBI NR]
  • gi|20856266|gb|AAM26656.1| At1g67750/F12A21_12 [Arabidopsis thaliana] [NCBI NR]
  • gi|18408851|ref|NP_564906.1| pectate lyase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18087517|gb|AAL58893.1|AF462797_1 At1g67750/F12A21_12 [Arabidopsis thaliana] [NCBI NR]
  • Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 [Swiss-Prot]
  • (Q9FXD8) Probable pectate lyase 5 precursor (EC 4.2.2.2) [athaliana3702.FASTAC.txt]
  • At1g67750/F12A21_12 [Arabidopsis thaliana]gi|18087517|gb|AAL58893.1| At1g67750/F12A21_12 [Arabidopsis thaliana]gi|32129846|sp|Q9FXD8|PEL5_ARATH Probable pectate lyase 5 precursorgi|18408851|ref|NP_564906.1| pectate lyase family protein [Arabidopsis tha [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Probable pectate lyase 5 precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | pectate lyase family protein | chr1:25405323-25406828 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • pectate lyase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Probable pectate lyase 5 precursor [nr-271106-contam.fasta]
  • At1g67750/F12A21_12 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectate lyase family protein | chr1:25401660-25403165 FORWARD LENGTH=408 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 408 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: pectate lyase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN  60
   61 PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV VTDSSDKDVV NPKPGTLRHA 120
  121 VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN 180
  181 IHDCKRKGNA YVRDSPSHYG WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST 240
  241 AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN 300
  301 DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL 360
  361 NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL FCRKGSRC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..408] PSI-BLAST 81.221849 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.142826098671881 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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