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Protein Overview: PLY4_ARATH

General Information:
Name(s) found: PLY4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|91805889|gb|ABE65673.1| pectate lyase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|32129845|sp|Q9C8G4.1|PEL4_ARATH RecName: Full=Probable pectate lyase 4; Flags: Precursor [NCBI NR]
  • pir||G86427 probable pectate lyase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15220729|ref|NP_174324.1| pectate lyase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12322129|gb|AAG51103.1|AC025295_11 pectate lyase, putative [Arabidopsis thaliana] [NCBI NR]
  • Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1 [Swiss-Prot]
  • (Q9C8G4) Putative pectate lyase 4 precursor (EC 4.2.2.2) [athaliana3702.FASTAC.txt]
  • Putative pectate lyase 4 precursorgi|12322129|gb|AAG51103.1| pectate lyase, putative [Arabidopsis thaliana]gi|25320898|pir||G86427 probable pectate lyase [imported] - Arabidopsis thalianagi|15220729|ref|NP_174324.1| pectate lyase family protein [Arabid [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Putative pectate lyase 4 precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | pectate lyase family protein | chr1:10710176-10711646 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Putative pectate lyase 4 precursor [nr-271106-contam.fasta]
  • pectate lyase, putative [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • lyase/ pectate lyase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • pectate lyase family protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr1:10710194-10711664 REVERSE LENGTH=368 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 368 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: pectate lyase activity [ISS]
    lyase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLVVIVSL LLAAFASPLL ETAHSYNVTA PRVSLNPIDA CWRRNPKWAT NRQALAHCAV  60
   61 GYGKAAIGGK NGPIYVVTNP SDNPTRPSPG TLRYAVSQPK PLWITFARDM VIVLKSQLMI 120
  121 NSYKTIDGRG AKVEIANGPC LRIRQVKHVI IHGISIHDCK ADPNGMDGDG IRVFQSTHVW 180
  181 IDHCFLSRCH DGLIDVIVSS TAVTISNNYF TQHDKVMLLG HDDSYMGDKD MRVTIAFNTF 240
  241 GPGLIERMPR VRRGYAHVAN NRYEKWQMYA IGGSANPIIF SEGNYFVAPE KRSSKQVTKR 300
  301 MMAGPDSKRW KWGTSRDVFM NGAFFGPPGV IVRPLYKGGE GFRVAHGSLV PSLTSSAGPL 360
  361 RCYVGRIC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..368] PSI-BLAST 65.0 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.142826098671881 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle