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Protein Overview: HFR1_ARATH

General Information:
Name(s) found: HFR1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|20532238|sp|Q9FE22.1|HFR1_ARATH RecName: Full=Transcription factor HFR1; AltName: Full=Protein LONG HYPOCOTYL IN FAR-RED 1; AltName: Full=Protein REDUCED PHYTOCHROME SIGNALING; AltName: Full=Transcription factor EN 68; AltName: Full=bHLH transcription [NCBI NR]
  • gi|18378953|ref|NP_563650.1| HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / protein binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|13183644|gb|AAK15282.1|AF323182_1 basic helix-loop-helix FBI1 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12025106|gb|AAG45733.1|AF288287_1 reduced phytochrome signaling 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|11870115|gb|AAG40617.1|AF324245_1 bHLH-like protein HFR1 [Arabidopsis thaliana] [NCBI NR]
  • Transcription factor HFR1 OS=Arabidopsis thaliana GN=HFR1 PE=1 SV=1 [Swiss-Prot]
  • (Q9FE22) Long hypocotyl in far-red 1 (bHLH-like protein HFR1) (Reduced phytochrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red light) [athaliana3702.FASTAC.txt]
  • Long hypocotyl in far-red 1 (bHLH-like protein HFR1) (Reduced phytochrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red light)gi|13183644|gb|AAK15282.1| basic hel [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Long hypocotyl in far-red 1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: RSF1, FBI1, REP1, HFR1 | HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / transcription factor | chr1:465933-467685 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Long hypocotyl in far-red 1 (bHLH-like protein HFR1) (Reduced phytochrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red light) [nr-271106-contam.fasta]
  • basic helix-loop-helix FBI1 protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • bHLH-like protein HFR1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • reduced phytochrome signaling 1; basic helix-loop-helix protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: HFR1, RSF1, FBI1, REP1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:465933-467685 REVERSE LENGTH=292 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 292 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][TAS]
    Biological Process: red, far-red light phototransduction [TAS]
    signal transduction [TAS]
    response to light intensity [IEP]
    blue light signaling pathway [TAS]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]
    protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNQAFMEL GWRNDVGSLA VKDQGMMSER ARSDEDRLIN GLKWGYGYFD HDQTDNYLQI  60
   61 VPEIHKEVEN AKEDLLVVVP DEHSETDDHH HIKDFSERSD HRFYLRNKHE NPKKRRIQVL 120
  121 SSDDESEEFT REVPSVTRKG SKRRRRDEKM SNKMRKLQQL VPNCHKTDKV SVLDKTIEYM 180
  181 KNLQLQLQMM STVGVNPYFL PATLGFGMHN HMLTAMASAH GLNPANHMMP SPLIPALNWP 240
  241 LPPFTNISFP HSSSQSLFLT TSSPASSPQS LHGLVPYFPS FLDFSSHAMR RL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..127] deduced N/A No confident structure predictions are available.
    2 View Details [128..209] PSI-BLAST 16.0 SREBP-1a
    3 View Details [210..292] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.60

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle