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Protein Overview: GIGAN_ARATH

General Information:
Name(s) found: GIGAN_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|6002680|gb|AAF00092.1|AF105064_1 GIGANTEA [Arabidopsis thaliana] [NCBI NR]
  • gi|5911782|emb|CAB56039.1| gigantea protein [Arabidopsis thaliana] [NCBI NR]
  • gi|51173164|gb|AAT97405.1| gigantea [Arabidopsis thaliana] [NCBI NR]
  • pir||T52575 gigantea protein [validated] - Arabidopsis thaliana [NCBI NR]
  • gi|18395159|ref|NP_564180.1| GI (GIGANTEA) [Arabidopsis thaliana] [NCBI NR]
  • gi|17433083|sp|Q9SQI2.2|GIGAN_ARATH RecName: Full=Protein GIGANTEA [NCBI NR]
  • (Q9SQI2) GIGANTEA protein [Swiss-Prot]
  • Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2 [Swiss-Prot]
  • gigantea [Arabidopsis thaliana]gi|5911782|emb|CAB56039.1| gigantea protein [Arabidopsis thaliana]gi|6002680|gb|AAF00092.1| GIGANTEA [Arabidopsis thaliana]gi|17433083|sp|Q9SQI2|GIGA_ARATH GIGANTEA proteingi|25333047|pir||T52575 gigantea protein [valida [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 GIGANTEA protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: FB, GI | GI (GIGANTEA); binding | chr1:8062387-8067436 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • GI (GIGANTEA) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • GIGANTEA [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • gigantea [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Protein GIGANTEA [nr-271106-contam.fasta]
  • gigantea protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: GI, FB | gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1173 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    nucleoplasm [IDA]
    Biological Process: response to cold [IMP]
    flower development [TAS]
    response to far red light [IMP]
    positive regulation of long-day photoperiodism, flowering [IMP]
    response to hydrogen peroxide [IMP]
    regulation of circadian rhythm [IMP]
    circadian rhythm [IDA]
    response to blue light [IDA]
    regulation of transcription [IDA]
    temperature compensation of the circadian clock [IMP]
    Molecular Function: protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ  60
   61 YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL VYSKEAHPFA SFISLVCPSS 120
  121 ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT 180
  181 QHERKPLRPL SPWISDILLA APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ 240
  241 LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA 300
  301 LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR 360
  361 LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP ALLFPPLSQV EGVEIQHAPI 420
  421 GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV 480
  481 DLPEIIVATP LQPPILSWNL YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE 540
  541 SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE 600
  601 AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA 660
  661 CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG IDSAISHTRR ILAILEALFS 720
  721 LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL 780
  781 YNLIDVHSKV VASIVDKAEP LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS 840
  841 RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS 900
  901 VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA 960
  961 VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN HDRPESLVIL ASASDLLLRA1020
 1021 TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH1080
 1081 PSAHVRALST SVLRDIMNQS SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC1140
 1141 LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..177] deduced N/A No confident structure predictions are available.
    2 View Details [178..298] deduced N/A No confident structure predictions are available.
    3 View Details [299..421] deduced N/A No confident structure predictions are available.
    4 View Details [422..643] deduced N/A No confident structure predictions are available.
    5 View Details [644..728] deduced N/A No confident structure predictions are available.
    6 View Details [729..975] deduced N/A No confident structure predictions are available.
    7 View Details [976..1069] MSA 1.008972 View MSA. No confident structure predictions are available.
    8 View Details [1070..1173] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.47

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle