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Protein Overview: COL9_ARATH

General Information:
Name(s) found: COL9_ARATH [Swiss-Prot]
Description(s) found:
Found 20 descriptions.
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  • Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 372 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: negative regulation of long-day photoperiodism, flowering [IMP]
    regulation of transcription [TAS]
    Molecular Function: zinc ion binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC  60
   61 VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS CYSGCPSSSE LASIWSFCLD 120
  121 LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM 180
  181 CEDDFYGNLG MDEVDMALEN YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP 240
  241 AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP 300
  301 PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA 360
  361 YDYDPLTPTR SY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..158] PSI-BLAST 4.69897 No description for 2djaA was found.
    2 View Details [159..221] deduced N/A No confident structure predictions are available.
    3 View Details [222..372] MSA 17.201991 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle