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Protein Overview: COL1_ARATH

General Information:
Name(s) found: COL1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9755630|emb|CAC01784.1| CONSTANS-like 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|26983888|gb|AAN86196.1| putative CONSTANS 1 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|2695705|emb|CAA71588.1| constans-like protein 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|2695703|emb|CAA71587.1| CONSTANS [Arabidopsis thaliana] [NCBI NR]
  • gi|18389244|gb|AAL67065.1| putative CONSTANS 1 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17432980|sp|O50055.1|COL1_ARATH RecName: Full=Zinc finger protein CONSTANS-LIKE 1 [NCBI NR]
  • gi|15242403|ref|NP_197089.1| COL1 (constans-like 1); transcription factor/ zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • pir||T51414 CONSTANS-like 1 - Arabidopsis thaliana [NCBI NR]
  • Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1 [Swiss-Prot]
  • (O50055) Zinc finger protein CONSTANS-LIKE 1 [athaliana3702.FASTAC.txt]
  • putative CONSTANS 1 protein [Arabidopsis thaliana]gi|9755630|emb|CAC01784.1| CONSTANS-like 1 [Arabidopsis thaliana]gi|2695705|emb|CAA71588.1| constans-like protein 1 [Arabidopsis thaliana]gi|2695703|emb|CAA71587.1| CONSTANS [Arabidopsis thaliana]gi|26 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Zinc finger protein CONSTANS-LIKE 1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: COL1 | COL1 (CONSTANS-LIKE 1); transcription factor/ zinc ion binding | chr5:5176300-5177476 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • constans-like protein 1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • COL1 (CONSTANS-LIKE 1); transcription factor/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative CONSTANS 1 protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • CONSTANS [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • CONSTANS-like 1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Zinc finger protein CONSTANS-LIKE 1 [nr-271106-contam.fasta]
  • | Symbols: COL1, ATCOL1 | CONSTANS-like 1 | chr5:5176297-5177473 REVERSE LENGTH=355 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 355 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: regulation of flower development [IMP]
    circadian rhythm [IMP]
    Molecular Function: zinc ion binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKVESNWAQ ACDTCRSAAC TVYCRADSAY LCSSCDAQVH AANRLASRHE RVRVCQSCER  60
   61 APAAFFCKAD AASLCTTCDS EIHSANPLAR RHQRVPILPI SEYSYSSTAT NHSCETTVTD 120
  121 PENRLVLGQE EEDEDEAEAA SWLLPNSGKN SGNNNGFSIG DEFLNLVDYS SSDKQFTDQS 180
  181 NQYQLDCNVP QRSYGEDGVV PLQIEVSKGM YQEQQNFQLS INCGSWGALR SSNGSLSHMV 240
  241 NVSSMDLGVV PESTTSDATV SNPRSPKAVT DQPPYPPAQM LSPRDREARV LRYREKKKMR 300
  301 KFEKTIRYAS RKAYAEKRPR IKGRFAKKKD VDEEANQAFS TMITFDTGYG IVPSF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..355] FFAS03 1.02 Crystal structure of octaheme cytochrome c from Shewanella oneidensis


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle