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Protein Overview: CAP13_ARATH

General Information:
Name(s) found: CAP13_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|46395987|sp|Q9FRH3.1|CAP13_ARATH RecName: Full=Putative clathrin assembly protein At1g25240 [NCBI NR]
  • pir||A86382 43.4K hypothetical protein - Arabidopsis thaliana [NCBI NR]
  • gi|15222535|ref|NP_173895.1| epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] [NCBI NR]
  • gi|11067289|gb|AAG28817.1|AC079374_20 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • Putative clathrin assembly protein At1g25240 OS=Arabidopsis thaliana GN=At1g25240 PE=3 SV=1 [Swiss-Prot]
  • (Q9FRH3) Putative clathrin assembly protein At1g25240 [Swiss-Prot]
  • Putative clathrin assembly protein At1g25240gi|25372679|pir||A86382 43.4K hypothetical protein - Arabidopsis thalianagi|11067289|gb|AAG28817.1| hypothetical protein [Arabidopsis thaliana]gi|15222535|ref|NP_173895.1| epsin N-terminal homology (ENTH) dom [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Putative clathrin assembly protein At1g25240 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related | chr1:8845218-8846348 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Putative clathrin assembly protein At1g25240 [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ENTH/VHS/GAT family protein | chr1:8845231-8846361 FORWARD LENGTH=376 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 376 amino acids

    Gene Ontology:
    Cellular Component: clathrin coat [IEA]
    mitochondrion [IEA]
    Biological Process: clathrin coat assembly [IEA]
    Molecular Function: clathrin binding [IEA]
    binding [ISS]
    phospholipid binding [IEA]
    phosphatidylinositol binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLWKRASGA LKDRKTLFTI GFSRKTSFRN PDLDSAIIHA TSHDDSSVDY HNAHRVYKWI  60
   61 RSSPANLKPL VHALSSRVNR TRSWIVALKA LMLVHGVLCC KVTSLQEIRR LPFDLSDFSD 120
  121 GHSRPSKTWG FNAFIRAYFS FLDQYSFFLS DQIRRRHKKP QLDSVNQELE RIEKLQSLLH 180
  181 MLLQIRPMAD NMKKTLILEA MDCVVIEIFD IYGRICSAIA KLLIKIHPAA GKAEAVIALK 240
  241 IVKKATSQGE DLALYFEFCK EFGVSNAHDI PKFVTIPEED IKAIEKVING VEEEEVKKKE 300
  301 DEVEEEKSII LVERPELQTI ITDKWEIFED DFCFTCKDIK ETDQHRKFNM DPSPLPLIVI 360
  361 DEPVYFTHTL PDLITF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..287] PSI-BLAST 75.39794 Clathrin assembly lymphoid myeloid leukaemia protein, Calm
    2 View Details [288..376] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.229007340928547 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.61

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle