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Protein Overview: arg-1

General Information:
Name(s) found: arg-1 / CE35515 [WormBase]
Description(s) found:
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  • WBGene00000185 locus:arg-1 Delta-like protein status:Partially_confirmed UniProt:Q7JNV6 protein_id:CCD64536.1 [WormBase]
  • gi|71989029|ref|NP_001024616.1| Apex-Related Genes family member (arg-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|34610402|gb|AAQ81272.1| Apex-related genes protein 1, isoform b [Caenorhabditis elegans] [NCBI NR]
  • [wormpep111.fasta]
  • Apex-related genes protein 1, isoform b [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE35515 WBGene00000185 locus:arg-1 status:Partially_confirmed TR:Q7JNV6 protein_id:AAQ81272.1 [wormpep150.fasta]
  • 35515 WBGene00000185 locus:arg-1 status:Predicted TR:Q7JNV6 protein_id:AAQ81272.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE35515 WBGene00000185 locus:arg-1 status:Predicted TR:Q7JNV6 protein_id:AAQ81272.1 [wormpep132.fasta]
  • 35515 WBGene00000185 locus:arg-1 status:Partially_confirmed TR:Q7JNV6 protein_id:AAQ81272.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • locus:arg-1 status:Partially_confirmed TN:AAQ81272 protein_id:AAQ81272.1 [wormpep115.fasta.reversed]
  • CE35515 WBGene00000185 locus:arg-1 status:Partially_confirmed UniProt:Q7JNV6_CAEEL protein_id:AAQ81272.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE35515 WBGene00000185 locus:arg-1 status:Partially_confirmed UniProt:Q7JNV6_CAEEL protein_id:AAQ81272.1| [wormORF-contam.fasta]
  • Apex-Related Genes family member (arg-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE35515 WBGene00000185 locus:arg-1 status:Partially_confirmed UniProt:Q7JNV6 protein_id:AAQ81272.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE35515 WBGene00000185 locus:arg-1 status:Partially_confirmed UniProt:Q7JNV6 protein_id:CCD64536.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE35515 WBGene00000185 locus:arg-1 status:Partially_confirmed UniProt:Q7JNV6 protein_id:CCD64536.1 Delta-like protein [wormpep246-ecoli-contam.fasta]
  • Isoform of H2KYS0, Delta-like protein OS=Caenorhabditis elegans GN=arg-1 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 349 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    Biological Process: cell communication [IEALink to PubMed article]
    Molecular Function: calcium ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFSFFITI FLCSIADTNA SGIIELLISS PQSVLIKSTA CASFKCPVHD ELSVPRNVEG  60
   61 GVPLRIHIGQ YRGEARQNID LHFEILEPST NEMLALEQHR APSDTKWNTG LPIVIETTLG 120
  121 FNVTVHLRNV CTSNYYGKRC NRYCIPSPAL HWECSTNGVR QCAVGWYGDD CSSGVNQIES 180
  181 RNIPLLDIKF CSHQNPCANG GVCSTDYKCQ CPSEFLGPRC ETPVSKVHCT LERVCKHGGT 240
  241 CVSVNRTNVQ CKCIRGFLGS LCEIGIHGNC SAMRCSVDET CQIRASFAPY HYDNLYFSVC 300
  301 VAGLALVASK CKKSEAGPIL PTVVYTASPN TRSTVYKVLS CHNLDNPKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..349] PSI-BLAST 8.522879 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ErbB-2 class receptor binding
    		•  2.49988032150831 bayes_pls_golite062009
  • receptor binding
    		•  2.31571280660349 bayes_pls_golite062009
  • ErbB-3 class receptor binding
    		•  2.14752073450101 bayes_pls_golite062009
  • binding
    		•  2.14092582858845 bayes_pls_golite062009
  • protein binding
    		•  1.87564165872234 bayes_pls_golite062009
  • signal transducer activity
    		•  1.48171797015526 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.48171797015526 bayes_pls_golite062009
  • epidermal growth factor receptor binding
    		•  1.08974638257724 bayes_pls_golite062009
  • growth factor activity
    		•  0.402016723620225 bayes_pls_golite062009
  • pattern binding
    		•  0.0196006376432096 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle