YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CE35403

General Information:
Name(s) found: CE35403 [WormBase]
Description(s) found:
Found 15 descriptions.
SHOW ALL
  • WBGene00015865 status:Partially_confirmed UniProt:Q18048 protein_id:CCD64766.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 565 amino acids

    Gene Ontology:
    Cellular Component: proteinaceous extracellular matrix [IEALink to PubMed article]
    Biological Process: extracellular matrix organization [IEALink to PubMed article]
    Molecular Function: collagen binding [IEALink to PubMed article]
    extracellular matrix structural constituent [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHGYCLILL LFPFIACLYG NENVDNILPY NPPGYMPPMP PTDPPGYDPD STFDTTPTPA  60
   61 PPSNGLRAPP MPKWTQEIPK ESSGQQLKIE DVVVGNNIDS HVEEVNGSGS GDTEGSGSGD 120
  121 KSGTEESFDA SGAQGDSLPD IMKAMDSEAE VLGVNCPSDI IFVIDATSSV RGIFEQYITY 180
  181 IEKVVEGLDV QPTVDHVGAI VYSSEKKQRT KIKLGEHKDR GSLVKAVDEL PFFSGITATG 240
  241 QALKFAANHT EGRRENFTLN YVILTDGYSY DLIESGARVL REVPNSAIYA VSIGEIFLRK 300
  301 ELEMITGNPD NVLTGSMSYG TLVKRLKLCD ARIKAATLKD SNPGLVRPGE FLSDRFQHRS 360
  361 RLTANLEAKK HTEDFVKTPE KRGPVKDCIY DIGIIFDSSG SLEKNFQKQL AFAKQLVEQM 420
  421 PISDNATRVG IVQFAGKTKV RVLANFSQNK SQLKTIIDRS PFYSGTTFTN QALKKMAALY 480
  481 EESKRPNAKL KLMLFTDGYS AEDTSEGEEA LKSQGVVVYT VGISTDKSAG LNMKELRGMA 540
  541 TSSEHYYDSS DFADLLKHFP SSQYC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..64] PSI-BLAST 14.69897 No description for 1y0fB was found.
    2 View Details [65..423] PSI-BLAST 24.30103 No description for 2ok5A was found.
    3 View Details [424..565] PSI-BLAST 36.39794 No description for 2b2xA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • cell surface binding
    		•  2.46888390388074 bayes_pls_golite062009
  • extracellular matrix structural constituent
    		•  2.04489724823728 bayes_pls_golite062009
  • integrin binding
    		•  2.04444262513364 bayes_pls_golite062009
  • glycosaminoglycan binding
    		•  2.00045662612384 bayes_pls_golite062009
  • binding
    		•  1.93005299727589 bayes_pls_golite062009
  • protein binding
    		•  1.92728242471285 bayes_pls_golite062009
  • eukaryotic cell surface binding
    		•  1.68349570497091 bayes_pls_golite062009
  • heparin binding
    		•  1.6630685875033 bayes_pls_golite062009
  • receptor binding
    		•  1.60410387637746 bayes_pls_golite062009
  • collagen binding
    		•  1.2751091031708 bayes_pls_golite062009
  • polysaccharide binding
    		•  0.907482471490999 bayes_pls_golite062009
  • pattern binding
    		•  0.742317192314889 bayes_pls_golite062009
  • lipoprotein lipase activator activity
    		•  0.286690929635759 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.19253871110923 bayes_pls_golite062009
  • growth factor binding
    		•  0.1251153657383 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle