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Protein Overview: sams-4

General Information:
Name(s) found: sams-4 / CE33517 [WormBase]
Description(s) found:
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  • WBGene00015540 locus:sams-4 status:Partially_confirmed UniProt:G8JY09 protein_id:CCD63372.1 [WormBase]
  • gi|32565911|ref|NP_872086.1| hypothetical protein C06E7.3 [Caenorhabditis elegans] [NCBI NR]
  • gi|28476838|gb|AAO44916.1| S-adenosyl methionine synthetase protein 4, isoform b, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep104.fasta]
  • CE33517 WBGene00015540 status:Partially_confirmed TR:Q86NI4 protein_id:AAO44916.1 [wormpep150.fasta]
  • 33517 WBGene00015540 status:Partially_confirmed TR:Q86NI4 protein_id:AAO44916.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • methionine adenosyltransferase family member (38.4 kD) (4G610) [Caenorhabditis elegans]gi|28476838|gb|AAO44916.1| Hypothetical protein C06E7.3b [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q86NI4 protein_id:AAO44916.1 [wormpep115.fasta.reversed]
  • CE33517 WBGene00015540 status:Partially_confirmed UniProt:Q86NI4_CAEEL protein_id:AAO44916.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE33517 WBGene00015540 status:Partially_confirmed UniProt:Q86NI4_CAEEL protein_id:AAO44916.1| [wormORF-contam.fasta]
  • Hypothetical protein C06E7.3b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • C06E7.3b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE33517 WBGene00015540 locus:sams-4 status:Partially_confirmed UniProt:Q86NI4 protein_id:AAO44916.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE33517 WBGene00015540 locus:sams-4 status:Partially_confirmed UniProt:Q86NI4_CAEEL protein_id:AAO44916.1 [wormbase_c-elegans_197_11-26-2008_reversed.fasta]
  • CE33517 WBGene00015540 locus:sams-4 status:Partially_confirmed UniProt:G8JY09 protein_id:CCD63372.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
    • Organism: Caenorhabditis elegans
    Length: 353 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    one-carbon metabolic process [IEALink to PubMed article]
    positive regulation of locomotion [IMPLink to PubMed article]
    Molecular Function: ATP binding [IEALink to PubMed article]
    methionine adenosyltransferase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMLCGEITS KAVVDYQVLV RNVIKKIGYD DSSKGFDYKT CNVLVALEQQ SPEIAAGVHV  60
   61 DKDSDDVGAG DQGIMFGYAT DETEEAMPLT LLLSHKLNRK LHELRRSGEL EWVRPDSKTQ 120
  121 VTIEYASEGG ACVPLRVHTV VISTQHSPDI SLDDLRKELI EKVIKAVIPA NLIDDKTIYH 180
  181 LNPCGSFIIG GPMGDAGLTG RKIIVDTYGG WGAHGGGAFS GKDPTKVDRS AAYAARWVAK 240
  241 SLVKAGLCRR CLVQVSYAIG VAKPLSVMVF SFGTSALSEE DLLTIVNDNF DLRPGKIIKN 300
  301 LDLKRPIYEP TAENGHFGHN NFPWEQPRNL KISADMLAKS QGPAQPDVIG IAH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..353] PSI-BLAST 157.0 No description for 2p02A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • methionine adenosyltransferase activity
    		•  8.00759843092519 bayes_pls_golite062009
  • transferase activity
    		•  1.78879119839291 bayes_pls_golite062009
  • binding
    		•  1.70779292877479 bayes_pls_golite062009
  • catalytic activity
    		•  1.59111295908728 bayes_pls_golite062009
  • transferase activity, transferring alkyl or aryl (other than methyl) groups
    		•  1.11999094477144 bayes_pls_golite062009
  • protein binding
    		•  0.298204436433395 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle